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  • National Metabolomics Data Repository

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    As of 01/19/21 the National Metabolomics Data Repository (NMDR) contains 1303 publicly available studies.
    A total of 1577 studies have been processed by the NMDR and the remainder (274) will be made available subject to their embargo dates.

    Recently released studies on NMDR

    ST001429 - MYC regulates ribosome biogenesis and mitochondrial gene expression programs through its interaction with Host Cell Factor-1; Homo sapiens; Vanderbilt University

    ST000954 - Explore Metabolites and Pathways Associated Increased Airway Hyperresponsiveness in Asthma; Homo sapiens; University of Florida

    ST000799 - Targeted TCA Panel of Myelin to Enhance Recovery of Function after SCI; Mus musculus; Mayo Clinic

  • Exemplary Studies

    A list of exemplary studies are listed here which adhere to the submission guidelines of Metabolomics Workbench. Specifically, publically available studies having all or most of the features below were identified as exemplary studies.

    • Well-written study summary
    • Detailed metadata for collection/treatment/chromatography/MS/NMR, etc.
    • Post-processing details
    • Presence of control samples
    • Raw data availability for samples and controls
    • One-to-one mapping of sample names to raw data file name
    • Internal standards (with measurements)
    • Clear and organized metabolite annotations

    These include different analysis (GC-MS, LC-MS, NMR) and species type. We recommend looking at these studies as a model example before submitting to Metabolomics Workbench.


NIH Common Fund Stage 2 Metabolomics Consortium Centers
Metabolomics Consortium Coordinating Center (M3C)
Richard Yost, U. of Florida
Metabolomics Workbench/NMDR
Shankar Subramaniam, UC San Diego
(this website)
Compound Identification Cores (CIDCs)
Arthur Edison, U. of Georgia
Alexey Nesvizhskii, U. of Michigan
Oliver Fiehn, UC Davis
Dean Paul Jones, Emory University
Thomas Metz, Pacific Northwest Nat. Lab.
Data and Tools Cores (DTCs)
John Weinstein, MD Anderson Cancer C.
Jamey Young, Vanderbilt University
Xiuxia Du, U. of North Carolina Charlotte
Shuzhao Li, Emory University
Alla Karnovsky, U. of Michigan
Katerina Kechris, U. of Colorado, Denver
Gary Patti, Washington U. at St. Louis


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