Summary of Study ST001293
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000875. The data can be accessed directly via it's Project DOI: 10.21228/M8KM4W This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST001293 |
Study Title | Determining secondary metabolite profile of Ilyonectria spp. pathogenic to ginseng root |
Study Summary | This experiment aims to ascertain a profile of secondary metabolites produced by Ilyonectria species capable of causing disappearing root rot in ginseng. Ilyonectria isolates were grown on potato dextrose agar for 20 days, then plugs were taken from the cultures and extracted with ethyl acetate. Extracts were analyzed by LC-HRMS and tandem HRMS. Data were analyzed by Principal component analysis and molecular networking with GNPS. |
Institute | Agriculture and Agri-Food Canada |
Last Name | Renaud |
First Name | Justin |
Address | 1391 Sandford Street, London, Ontario, LN5V 4T3, Canada |
justin.renaud@agr.gc.ca | |
Phone | 519-953-6698 |
Submit Date | 2019-12-16 |
Total Subjects | 22 |
Raw Data Available | Yes |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2020-04-15 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Fungi; Subject species: Ilyonectria mors-panacis;Ilyonectria rufa;Ilyonectria robusta;Ilyonectria torresensis;Ilyonectria estremocensis;Neonectria obtusispora (Factor headings shown in green)
mb_sample_id | local_sample_id | Virulence |
---|---|---|
SA093977 | 251609_Ilyonectria_rufa-MS2pos | Avirulent |
SA093978 | Neonectria_obtusisporum-140KfullMSneg | Avirulent |
SA093979 | 251609_Ilyonectria_rufa-MS2neg | Avirulent |
SA093980 | 226721_Ilyonectria_rufa-MS2pos | Avirulent |
SA093981 | 226721_Ilyonectria_rufa-MS2neg | Avirulent |
SA093982 | Neonectria_obtusisporum-140KfullMSpos | Avirulent |
SA093983 | Neonectria_obtusisporum-MS2neg | Avirulent |
SA093984 | 226730_Ilyonectria_estremocensis-MS2neg | Avirulent |
SA093985 | 226730_Ilyonectria_estremocensis-140KfullMSpos | Avirulent |
SA093986 | 226730_Ilyonectria_estremocensis-140KfullMSneg | Avirulent |
SA093987 | Neonectria_obtusisporum-MS2pos | Avirulent |
SA093988 | 226730_Ilyonectria_estremocensis-MS2pos | Avirulent |
SA093989 | 226721_Ilyonectria_rufa-140KfullMSpos | Avirulent |
SA093990 | 144524_Ilyonectria_torresensis-140KfullMSpos | Avirulent |
SA093991 | 144524_Ilyonectria_torresensis-140KfullMSneg | Avirulent |
SA093992 | 251608_Ilyonectria_rufa-140KfullMSpos | Avirulent |
SA093993 | 251608_Ilyonectria_rufa-140KfullMSneg | Avirulent |
SA093994 | 226721_Ilyonectria_rufa-140KfullMSneg | Avirulent |
SA093995 | 144524_Ilyonectria_torresensis-MS2neg | Avirulent |
SA093996 | 251608_Ilyonectria_rufa-MS2pos | Avirulent |
SA093997 | 144524_Ilyonectria_torresensis-MS2pos | Avirulent |
SA093998 | 251609_Ilyonectria_rufa-140KfullMSpos | Avirulent |
SA093999 | 251608_Ilyonectria_rufa-MS2neg | Avirulent |
SA094000 | 251609_Ilyonectria_rufa-140KfullMSneg | Avirulent |
SA094001 | PotatoDextroseAgar_blankmedia-MS2neg | Blank |
SA094002 | PotatoDextroseAgar_blankmedia-140KfullMSneg | Blank |
SA094003 | PotatoDextroseAgar_blankmedia-140KfullMSpos | Blank |
SA094004 | PotatoDextroseAgar_blankmedia-MS2pos | Blank |
SA094005 | unknown_compound1_seedspectra_MS2pos | GNPS Seed spectra |
SA094006 | Radicicol_seedspectra_MS2pos | GNPS Seed spectra |
SA094007 | unknown_compound2_seedspectra_MS2pos | GNPS Seed spectra |
SA094008 | QC4-140KfullMSneg | Quality Control |
SA094009 | QC4-140KfullMSpos | Quality Control |
SA094010 | QC5-140KfullMSneg | Quality Control |
SA094011 | QC5-140KfullMSpos | Quality Control |
SA094012 | QC3-140KfullMSpos | Quality Control |
SA094013 | QC2-140KfullMSpos | Quality Control |
SA094014 | QC1-140KfullMSpos | Quality Control |
SA094015 | QC1-140KfullMSneg | Quality Control |
SA094016 | QC3-140KfullMSneg | Quality Control |
SA094017 | QC2-140KfullMSneg | Quality Control |
SA094018 | 251607_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094019 | 251607_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094020 | 251607_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094021 | 251606_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094022 | 251606_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094023 | 251606_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094024 | 251606_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094025 | 251607_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094026 | 251605_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094027 | 251610_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094028 | 251611_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094029 | 251611_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094030 | 251610_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094031 | 251611_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094032 | 251611_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094033 | 251610_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094034 | 251610_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094035 | 251604_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094036 | 230337_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094037 | 226729_Ilyonectria_robusta-MS2pos | Virulent |
SA094038 | 226729_Ilyonectria_robusta-MS2neg | Virulent |
SA094039 | 226729_Ilyonectria_robusta-140KfullMSpos | Virulent |
SA094040 | 230337_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094041 | 230337_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094042 | 230338_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094043 | 230338_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094044 | 230338_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094045 | 230337_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094046 | 226729_Ilyonectria_robusta-140KfullMSneg | Virulent |
SA094047 | 226727_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094048 | 220159_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094049 | 139398_Ilyonectria_robusta-MS2pos | Virulent |
SA094050 | 139398_Ilyonectria_robusta-MS2neg | Virulent |
SA094051 | 139398_Ilyonectria_robusta-140KfullMSpos | Virulent |
SA094052 | 220159_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094053 | 220159_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094054 | 226727_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094055 | 226727_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094056 | 226727_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094057 | 220159_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094058 | 230338_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094059 | 234582_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094060 | 251603_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094061 | 251603_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094062 | 251603_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094063 | 251603_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094064 | 139398_Ilyonectria_robusta-140KfullMSneg | Virulent |
SA094065 | 251604_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094066 | 251605_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094067 | 251605_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094068 | 251604_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094069 | 251604_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094070 | 251602_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094071 | 251602_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094072 | 251601_Ilyonectria_mors-panacis-140KfullMSneg | Virulent |
SA094073 | 234582_Ilyonectria_mors-panacis-MS2pos | Virulent |
SA094074 | 234582_Ilyonectria_mors-panacis-MS2neg | Virulent |
SA094075 | 234582_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |
SA094076 | 251601_Ilyonectria_mors-panacis-140KfullMSpos | Virulent |