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MB Sample ID: SA083465
| Local Sample ID: | 36-Synechocystis_6803-cell-13-3 |
| Subject ID: | SU001266 |
| Subject Type: | Bacteria |
| Subject Species: | Synechocystis sp. PCC 6803 |
| Taxonomy ID: | 1148 |
| Genotype Strain: | NCBI:txid1148 |
| Cell Biosource Or Supplier: | ATCC |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN001995 |
|---|---|
| Analysis type | MS |
| Chromatography type | Reversed phase |
| Chromatography system | Waters Xevo G2 |
| Column | Waters Acquity UPLC CSH Phenyl Hexyl ( 100 x 1.0mm,1.7um) |
| MS Type | ESI |
| MS instrument type | QTOF |
| MS instrument name | Waters Xevo QS |
| Ion Mode | POSITIVE |
| Units | spectral abundance per cell |
MS:
| MS ID: | MS001848 |
| Analysis ID: | AN001995 |
| Instrument Name: | Waters Xevo QS |
| Instrument Type: | QTOF |
| MS Type: | ESI |
| MS Comments: | Compounds were created by clustering features using RAMClustR (Broeckling et al. 2014). RAMClustR uses a similarity matric which calculates feature correlation across samples and retention time correlation between features. Hierarchical clustering of the similarity matrix was computed via the fastcluter package (Müllner 2013). The resulting clustered dendrogram is cut using DynamicTreeCut and spectra are created with clusters and features abundances from input data (Langfelder, Zhang, and Horvath 2008). The abundance for each mass in spectra is a weighted mean of feature intensity. The RAMClustR outputs are compounds (clusters of correlated features) and intensities for each sample; spectral abundance intensities reflect weighted mean of all features within the compound. |
| Ion Mode: | POSITIVE |
