Summary of Study ST000611

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000447. The data can be accessed directly via it's Project DOI: 10.21228/M88P55 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000611
Study TitleRelative level of inosine/adenosine and sarcosine
Study SummaryLC/MS-MS measurement of inosine to adenosine ratio as well as GC/MS measurement of sarcosine relative values in urine samples from prostate cancer and case control patients in a group of ancestry verified African American and European American.
Institute
Baylor College of Medicine
Last NameSreekumar
First NameArun
AddressOne Baylor Plaza, 120D, Houston, TX, 77030
EmailArun.Sreekumar@bcm.edu
Phone713-798-3305
Submit Date2017-05-19
Analysis Type DetailLC-MS
Release Date2019-07-17
Release Version1
Arun Sreekumar Arun Sreekumar
https://dx.doi.org/10.21228/M88P55
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000447
Project DOI:doi: 10.21228/M88P55
Project Title:Prostate cancer disparity study on urine
Project Summary:LC/MS-MS measurement of inosine to adenosine ratio as well as GC/MS measurement of sarcosine relative values in urine samples from
Institute:Baylor College of Medicine
Last Name:Sreekumar
First Name:Arun
Address:One Baylor Plaza, Houston, TX, 77030, USA
Email:Arun.Sreekumar@bcm.edu
Phone:713-798-3305

Subject:

Subject ID:SU000634
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id group
SA03359819223Cancer | RACE:African American
SA03359919205Cancer | RACE:African American
SA03360019236Cancer | RACE:African American
SA03360119192Cancer | RACE:African American
SA03360219402Cancer | RACE:African American
SA03360319515Cancer | RACE:African American
SA03360419428Cancer | RACE:African American
SA03360519144Cancer | RACE:African American
SA03360619379Cancer | RACE:African American
SA03360719064Cancer | RACE:African American
SA03360818640Cancer | RACE:African American
SA03360918567Cancer | RACE:African American
SA03361018538Cancer | RACE:African American
SA03361118765Cancer | RACE:African American
SA03361218893Cancer | RACE:African American
SA03361319580Cancer | RACE:African American
SA03361418970Cancer | RACE:African American
SA03361518939Cancer | RACE:African American
SA03361619139Cancer | RACE:African American
SA03361719644Cancer | RACE:African American
SA03361820262Cancer | RACE:African American
SA03361920144Cancer | RACE:African American
SA03362020120Cancer | RACE:African American
SA03362120405Cancer | RACE:African American
SA03362220436Cancer | RACE:African American
SA03362317122Cancer | RACE:African American
SA03362421042Cancer | RACE:African American
SA03362520463Cancer | RACE:African American
SA03362620082Cancer | RACE:African American
SA03362719924Cancer | RACE:African American
SA03362819682Cancer | RACE:African American
SA03362919666Cancer | RACE:African American
SA03363018517Cancer | RACE:African American
SA03363119800Cancer | RACE:African American
SA03363219815Cancer | RACE:African American
SA03363319901Cancer | RACE:African American
SA03363419853Cancer | RACE:African American
SA03363519838Cancer | RACE:African American
SA03363619641Cancer | RACE:African American
SA03363719460Cancer | RACE:African American
SA03363819678Cancer | RACE:African American
SA03363919502Cancer | RACE:African American
SA03364019418Cancer | RACE:African American
SA03364119270Cancer | RACE:African American
SA03364219766Cancer | RACE:African American
SA03364319805Cancer | RACE:African American
SA03364420149Cancer | RACE:African American
SA03364520141Cancer | RACE:African American
SA03364620115Cancer | RACE:African American
SA03364719049Cancer | RACE:African American
SA03364818998Cancer | RACE:African American
SA03364918515Cancer | RACE:African American
SA03365018175Cancer | RACE:African American
SA03365118317Cancer | RACE:African American
SA03365218331Cancer | RACE:African American
SA03365318850Cancer | RACE:African American
SA03365418901Cancer | RACE:African American
SA03365518887Cancer | RACE:African American
SA03365618882Cancer | RACE:African American
SA03365715298Cancer | RACE:African American
SA03365819675Cancer | RACE:African American
SA03365918296Cancer | RACE:African American
SA03366018234Cancer | RACE:African American
SA03366118183Cancer | RACE:African American
SA03366218177Cancer | RACE:African American
SA03366318302Cancer | RACE:African American
SA03366418378Cancer | RACE:African American
SA03366518494Cancer | RACE:African American
SA03366618439Cancer | RACE:African American
SA03366716710Cancer | RACE:African American
SA03366818115Cancer | RACE:African American
SA03366918414Cancer | RACE:African American
SA03367018097Cancer | RACE:African American
SA03367117897Cancer | RACE:African American
SA03367217891Cancer | RACE:African American
SA03367318020Cancer | RACE:African American
SA03367417985Cancer | RACE:African American
SA03367517234Cancer | RACE:African American
SA03367618073Cancer | RACE:African American
SA03367718064Cancer | RACE:African American
SA03367820101Cancer | RACE:European American
SA03367920406Cancer | RACE:European American
SA03368020285Cancer | RACE:European American
SA03368119834Cancer | RACE:European American
SA03368219312Cancer | RACE:European American
SA03368320694Cancer | RACE:European American
SA03368419870Cancer | RACE:European American
SA03368520020Cancer | RACE:European American
SA03368620036Cancer | RACE:European American
SA03368718834Cancer | RACE:European American
SA03368818775Cancer | RACE:European American
SA03368918737Cancer | RACE:European American
SA03369019274Cancer | RACE:European American
SA03369118803Cancer | RACE:European American
SA03369218811Cancer | RACE:European American
SA03369318876Cancer | RACE:European American
SA03369418865Cancer | RACE:European American
SA03369518724Cancer | RACE:European American
SA03369618890Cancer | RACE:European American
SA03369718955Cancer | RACE:European American
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Collection:

Collection ID:CO000628
Collection Summary:Urine from 80 each of ancestry typed AA and EA prostate cancer patients were used for this analysis. Urine specimens were spun and the supernatant was stored at −70°C until analysis.
Sample Type:Urine

Treatment:

Treatment ID:TR000648
Treatment Summary:NA

Sample Preparation:

Sampleprep ID:SP000641
Sampleprep Summary:10uL urine supernatant was mixed with 40 uL of an equimolar mixture containing two standard compounds ([15N] Tryptophan and Zeatine) in an equal volume of water and methanol prior to LC-MS analysis.

Combined analysis:

Analysis ID AN000936
Analysis type MS
Chromatography type Reversed phase
Chromatography system Agilent 1290 Infinity
Column Agilent SB-CN RRHD (100 x 3.0mm,1.8um)
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name Agilent
Ion Mode POSITIVE
Units uM

Chromatography:

Chromatography ID:CH000667
Instrument Name:Agilent 1290 Infinity
Column Name:Agilent SB-CN RRHD (100 x 3.0mm,1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000832
Analysis ID:AN000936
Instrument Name:Agilent
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:POSITIVE
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