Summary of Study ST000747

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000538. The data can be accessed directly via it's Project DOI: 10.21228/M84687 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000747
Study TitleMetabolomics of mice inoculated with human stool (part III).
Study TypeMS analysis
Study SummaryMice were inoculated with human stool samples from donors in a high gene copy number group or low gene copy number group. After several weeks, cecal contents were collected and frozen at -80. Aliquots were made on dry ice and then stored at -80 until shipment on dry ice. Analysis of short chain fatty acids (SCFA) of cecal content was performed.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups56
Total Subjects43
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M84687
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000538
Project DOI:doi: 10.21228/M84687
Project Title:Metabolomics of mice inoculated with human microbiota
Project Type:MS analysis
Project Summary:Metabolomics of mice inoculated with human microbiota
Institute:Cornell University
Department:Microbiology
Laboratory:Ley Lab
Last Name:Ley
First Name:Ruth
Address:Ithaca, NY
Email:rel222@cornell.edu
Phone:607-255-4954

Subject:

Subject ID:SU000770
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id AMY1 group
SA041379S00020340- | EXPERIMENT:-
SA041380S00018946high | EXPERIMENT:AMY1.3
SA041381S00018945high | EXPERIMENT:AMY1.3
SA041382S00018948high | EXPERIMENT:AMY1.3
SA041383S00018950high | EXPERIMENT:AMY1.3
SA041384S00018952high | EXPERIMENT:AMY1.3
SA041385S00018941high | EXPERIMENT:AMY1.3
SA041386S00018932high | EXPERIMENT:AMY1.3
SA041387S00018943high | EXPERIMENT:AMY1.3
SA041388S00018939high | EXPERIMENT:AMY1.3
SA041389S00018935high | EXPERIMENT:AMY1.3
SA041390S00018937high | EXPERIMENT:AMY1.3
SA041391S00018933high | EXPERIMENT:AMY1.3
SA041392S00018962high | EXPERIMENT:AMY1.4
SA041393S00018958high | EXPERIMENT:AMY1.4
SA041394S00018960high | EXPERIMENT:AMY1.4
SA041395S00018973high | EXPERIMENT:AMY1.4
SA041396S00018968high | EXPERIMENT:AMY1.4
SA041397S00018956high | EXPERIMENT:AMY1.4
SA041398S00018972high | EXPERIMENT:AMY1.4
SA041399S00018966high | EXPERIMENT:AMY1.4
SA041400S00018970high | EXPERIMENT:AMY1.4
SA041401S00018964high | EXPERIMENT:AMY1.4
SA041402S00018953high | EXPERIMENT:AMY1.4
SA041403S00018954high | EXPERIMENT:AMY1.4
SA041404S00018940low | EXPERIMENT:AMY1.3
SA041405S00018942low | EXPERIMENT:AMY1.3
SA041406S00018938low | EXPERIMENT:AMY1.3
SA041407S00018944low | EXPERIMENT:AMY1.3
SA041408S00018936low | EXPERIMENT:AMY1.3
SA041409S00018934low | EXPERIMENT:AMY1.3
SA041410S00018947low | EXPERIMENT:AMY1.3
SA041411S00018949low | EXPERIMENT:AMY1.3
SA041412S00018951low | EXPERIMENT:AMY1.3
SA041413S00018961low | EXPERIMENT:AMY1.4
SA041414S00018959low | EXPERIMENT:AMY1.4
SA041415S00018955low | EXPERIMENT:AMY1.4
SA041416S00018971low | EXPERIMENT:AMY1.4
SA041417S00018963low | EXPERIMENT:AMY1.4
SA041418S00018957low | EXPERIMENT:AMY1.4
SA041419S00018967low | EXPERIMENT:AMY1.4
SA041420S00018969low | EXPERIMENT:AMY1.4
SA041421S00018965low | EXPERIMENT:AMY1.4
Showing results 1 to 43 of 43

Collection:

Collection ID:CO000764
Collection Summary:-
Sample Type:Intestine

Treatment:

Treatment ID:TR000784
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000777
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001171
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Agilent HP5-MS (15m × 0.25mm, 0.25 um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Ion Mode POSITIVE
Units pmol/mg

Chromatography:

Chromatography ID:CH000823
Instrument Name:Agilent 7890N
Column Name:Agilent HP5-MS (15m × 0.25mm, 0.25 um)
Chromatography Type:GC

MS:

MS ID:MS001066
Analysis ID:AN001171
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf
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