Summary of Study ST000012

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000011. The data can be accessed directly via it's Project DOI: 10.21228/M8QP4T This work is supported by NIH grant, U2C- DK119886.


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Study IDST000012
Study TitleExtraction Optimization Study
Study TypeSolvent treatment
Study SummarySteel Ball/ Glass bead + Chloroform/ Isopropanol treatment
University of California, Davis
DepartmentDavis Genome Center
Last NameKind
First NameTobias
Address451 E. Health Sci. Drive, Davis, California 95616, USA
Submit Date2013-05-20
Num Groups4
Total Subjects32
Raw Data AvailableYes
Raw Data File Type(s)smpbz2
Uploaded File Size171 M
Analysis Type DetailGC-MS
Release Date2013-06-19
Release Version1
Tobias Kind Tobias Kind application/zip

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Project ID:PR000011
Project DOI:doi: 10.21228/M8QP4T
Project Title:Extraction Optimization
Project Type:MS study
Project Summary:Steel Ball/ Glass bead + Chloroform/ Isopropanol treatment
Institute:University of California, Davis
Department:Davis Genome Center
Last Name:Fiehn
First Name:Oliver
Address:451 E. Health Sci. Drive, Davis, California 95616, USA
Publications:Do Yup Lee and Oliver Fiehn, High quality metabolomic data for Chlamydomonas reinhardtii PMCID: PMC2377246 Abstract


Subject ID:SU000014
Subject Type:Plant
Subject Species:Chlamydomonas reinhardtii
Taxonomy ID:3055
Species Group:Plant


Subject type: Plant; Subject species: Chlamydomonas reinhardtii (Factor headings shown in green)

mb_sample_id local_sample_id SamplePrepTreatment
SA000626116162Glass Beads,Chloroform
SA000627116167Glass Beads,Chloroform
SA000628116172Glass Beads,Chloroform
SA000629116177Glass Beads,Chloroform
SA000630116182Glass Beads,Chloroform
SA000631116187Glass Beads,Chloroform
SA000632116192Glass Beads,Chloroform
SA000633116197Glass Beads,Chloroform
SA000634116203Glass Beads,Isopropanol
SA000635116208Glass Beads,Isopropanol
SA000636116213Glass Beads,Isopropanol
SA000637116218Glass Beads,Isopropanol
SA000638116223Glass Beads,Isopropanol
SA000639116228Glass Beads,Isopropanol
SA000640116233Glass Beads,Isopropanol
SA000641116238Glass Beads,Isopropanol
SA000610116080Steel Ball,Chloroform
SA000611116085Steel Ball,Chloroform
SA000612116090Steel Ball,Chloroform
SA000613116095Steel Ball,Chloroform
SA000614116100Steel Ball,Chloroform
SA000615116105Steel Ball,Chloroform
SA000616116110Steel Ball,Chloroform
SA000617116115Steel Ball,Chloroform
SA000618116121Steel Ball,Isopropanol
SA000619116126Steel Ball,Isopropanol
SA000620116131Steel Ball,Isopropanol
SA000621116136Steel Ball,Isopropanol
SA000622116141Steel Ball,Isopropanol
SA000623116146Steel Ball,Isopropanol
SA000624116151Steel Ball,Isopropanol
SA000625116156Steel Ball,Isopropanol
Showing results 1 to 32 of 32


Collection ID:CO000012
Collection Summary:-
Sample Type:Algae


Treatment ID:TR000020
Treatment Protocol Comments:Plant Physiol. Vol. 138, 2005
Plant Growth Support:TAP
Plant Growth Location:Do Yup Lab in Fiehn Group
Plant Light Period:24 h day at 70 fluence (cool white light)
Plant Humidity:Day 25%, Night 25%
Plant Temp:Day 23 C, Night 23 C
Plant Estab Date:2006-11-07

Sample Preparation:

Sampleprep ID:SP000022
Sampleprep Summary:-
Extraction Method:Steel Ball+Chloroform/Steel Ball+Isopropanol/Glass Beads+Chloroform/Glass Beads+Isopropanol

Combined analysis:

Analysis ID AN000029
Analysis type MS
Chromatography type GC
Chromatography system Agilent 6890N
MS Type EI
MS instrument type GC-TOF
MS instrument name Leco Pegasus III GC TOF
Units Peak height


Chromatography ID:CH000012
Instrument Name:Agilent 6890N
Chromatography Type:GC


MS ID:MS000028
Analysis ID:AN000029
Instrument Name:Leco Pegasus III GC TOF
Instrument Type:GC-TOF
MS Type:EI