Summary of Study ST000182

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000156. The data can be accessed directly via it's Project DOI: 10.21228/M8XS3B This work is supported by NIH grant, U2C- DK119886.


Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000182
Study TitleBone Marrow Metabolomics (part I)
Study TypeAcyl-carnitine analysis (plasma)
Study SummaryWomen of reproductive age are protected from metabolic disease relative to postmenopausal women and men. Most preclinical rodent studies are skewed toward the use of male mice to study obesity-induced metabolic dysfunction because of a similar protection observed in female mice. How sex differences in obesity-induced inflammatory responses contribute to these observations is unknown. We have compared and contrasted the effects of high fat diet-induced obesity on glucose metabolism and leukocyte activation in multiple depots in male and female C57Bl/6 mice. With both short term and long term high fat diet, male mice demonstrated increased weight gain and CD11c(+) adipose tissue macrophage content compared with female mice despite similar degrees of adipocyte hypertrophy. Competitive bone marrow transplant studies demonstrated that obesity induced a preferential contribution of male hematopoietic cells to circulating leukocytes and adipose tissue macrophages compared with female cells independent of the sex of the recipient. Sex differences in macrophage and hematopoietic cell in vitro activation in response to obesogenic cues were observed to explain these results. In summary, this report demonstrates that male and female leukocytes and hematopoietic stem cells have cell-autonomous differences in their response to obesity that contribute to an amplified response in males compared with females. The research is published, but data obtained by core not included in the paper:
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Submit Date2015-06-07
Num Groups4
Total Subjects16
Raw Data AvailableYes
Raw Data File Type(s)d
Uploaded File Size2.2 G
Analysis Type DetailLC-MS
Release Date2016-06-18
Release Version1
Maureen Kachman Maureen Kachman application/zip

Select appropriate tab below to view additional metadata details:


Project ID:PR000156
Project DOI:doi: 10.21228/M8XS3B
Project Title:Bone Marrow Studies
Project Summary:Assessing if there is a difference between groups
Institute:University of Michigan
Department:Pedatric Endocrinology
Laboratory:Singer Lab
Last Name:Singer
First Name:Kanakadurga
Address:Ann Arbor, MI


Subject ID:SU000201
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal


Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Diet (Normal or High Fat) KW
SA009525S00015382HF N
SA009526S00015383HF N
SA009527S00015381HF N
SA009528S00015384HF N
SA009529S00015392HF Y
SA009530S00015389HF Y
SA009531S00015391HF Y
SA009532S00015390HF Y
SA009533S00015380N N
SA009534S00015377N N
SA009535S00015379N N
SA009536S00015378N N
SA009537S00015386N Y
SA009538S00015385N Y
SA009539S00015387N Y
SA009540S00015388N Y
Showing results 1 to 16 of 16


Collection ID:CO000188
Collection Summary:-
Sample Type:Bone Marrow


Treatment ID:TR000208

Sample Preparation:

Sampleprep ID:SP000202
Sampleprep Summary:-
Sampleprep Protocol Filename:Gly-TCA-nucleotides_analysis_protocol-2015-03-09.docx

Combined analysis:

Analysis ID AN000280
Analysis type MS
Chromatography type HILIC
Chromatography system Agilent 1260
Column Phenomenex Luna NH2 (150 x 1mm,3um)
MS instrument type QTOF
MS instrument name Agilent 6530 QTOF
Units µM (100µg/ml protein per sample)


Chromatography ID:CH000202
Methods ID:AQM020
Instrument Name:Agilent 1260
Column Name:Phenomenex Luna NH2 (150 x 1mm,3um)
Chromatography Type:HILIC


MS ID:MS000229
Analysis ID:AN000280
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
Acquisition Parameters
Processing Parameters