Summary of study ST000192

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000163. The data can be accessed directly via it's Project DOI: 10.21228/M85887 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

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Study IDST000192
Study TitleTRF Microbiome Study NA/FA/FT/CDKO 4-14
Study SummaryThis is a time restricted feeding study (see M Hatori, et al. Cell Metabolism (2012), 15(6), 848-860). Briefly, there are four groups of mice: (1) NA mice are on a normal chow ad libitum diet; (2) FA mice are on a high fat ad libitum diet (i.e. Diet induced obesity); (3) FT mice are on a high fat time restricted diet (i.e. only eat for 8 hours/day and fast for 16); and (4) CDKO mice which are cry knock out mice on a normal chow ad libitum diet. We have collected stool from these four groups while they are in the light and in the dark. Our expectation is that their stool metabolites will be different at different times of the day.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2015-06-08
Num Groups8
Total Subjects31
Raw Data AvailableYes
Raw Data File Type(s).xml,.xsd,.stg, .bin, .cd,.cG
Uploaded File Size64 M
Analysis Type DetailLC-MS
Release Date2015-12-28
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M85887
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000163
Project DOI:doi: 10.21228/M85887
Project Title:Time Restricted Microbiome Studies
Project Summary:Study Time Restricted Microbiomes
Institute:University of California, San Diego
Department:Gastroenterology/Internal Medicine
Laboratory:Zarrinpar Lab
Last Name:Zarrinpar
First Name:Amir
Address:San Diego, CA
Email:azarrinp@ucsd.edu
Phone:858-442-1359

Subject:

Subject ID:SU000211
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Time Restriction diurnal cycle Diet mouse strain
SA009717S00014230ad libitum day high fat BKGND
SA009718S00014232ad libitum day high fat BKGND
SA009719S00014231ad libitum day high fat BKGND
SA009720S00014233ad libitum day high fat BKGND
SA009721S00014225ad libitum day normal BKGND
SA009722S00014223ad libitum day normal BKGND
SA009723S00014224ad libitum day normal BKGND
SA009724S00014222ad libitum day normal BKGND
SA009725S00014246ad libitum day normal CDKO
SA009726S00014247ad libitum day normal CDKO
SA009727S00014245ad libitum day normal CDKO
SA009728S00014248ad libitum day normal CDKO
SA009729S00014236ad libitum night high fat BKGND
SA009730S00014237ad libitum night high fat BKGND
SA009731S00014235ad libitum night high fat BKGND
SA009732S00014234ad libitum night high fat BKGND
SA009733S00014228ad libitum night normal BKGND
SA009734S00014229ad libitum night normal BKGND
SA009735S00014226ad libitum night normal BKGND
SA009736S00014227ad libitum night normal BKGND
SA009737S00014249ad libitum night normal CDKO
SA009738S00014252ad libitum night normal CDKO
SA009739S00014251ad libitum night normal CDKO
SA009740S00014250ad libitum night normal CDKO
SA009741S00014238time restricted day high fat BKGND
SA009742S00014239time restricted day high fat BKGND
SA009743S00014241time restricted day high fat BKGND
SA009744S00014240time restricted day high fat BKGND
SA009745S00014244time restricted night high fat BKGND
SA009746S00014242time restricted night high fat BKGND
SA009747S00014243time restricted night high fat BKGND
Showing results 1 to 31 of 31

Collection:

Collection ID:CO000199
Sample Type:Feces

Treatment:

Treatment ID:TR000219

Sample Preparation:

Sampleprep ID:SP000213
Sampleprep Protocol Filename:Bile-acids-2015-03-11.docx

Combined analysis:

Analysis ID AN000294
Analysis type MS
Chromatography type
Chromatography system
Column
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name Agilent 6490 QQQ
Ion Mode NEGATIVE
Units pmol/mg sample

Chromatography:

Chromatography ID:CH000215
Methods ID:AQM040
Methods Filename:2014-03-27-Bile_acid-full-ESN-insert.m.zip

MS:

MS ID:MS000243
Analysis ID:AN000294
Instrument Name:Agilent 6490 QQQ
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:NEGATIVE
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