Summary of Study ST000579

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000425. The data can be accessed directly via it's Project DOI: 10.21228/M84305 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000579
Study TitleDBA2J Phosphatidylethanolamine Analysis
Study SummaryAH and TM samples were obtained from young-normotensive DBA/2J (3 and 7.5 months) and old-hypertensive DBA/2J mice (8-8.5, 10 and 12 month). Lipids were extracted using modified Bligh and Dyer method and subjected to mass spectrometric identification using appropriate class-specific lipid standards and ratiometric quantification. Corresponding aqueous phase (of extraction) protein concentrations were measured using Bradford method.
Institute
University of Miami
Last NameBhattacharya
First NameSanjoy
AddressMcKnight Vision Research Building, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, 1638 NW 10th Avenue, Room 706A, Miami, Florida 33136
EmailSBhattacharya@med.miami.edu
Phone305-482-4103
Submit Date2017-04-03
Raw Data AvailableYes
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2019-05-15
Release Version1
Sanjoy Bhattacharya Sanjoy Bhattacharya
https://dx.doi.org/10.21228/M84305
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000425
Project DOI:doi: 10.21228/M84305
Project Title:Phosphatidylethanolamine Analysis in Aqueous Humor and Trabecular Meshwork of DBA/2J mice
Project Summary:Compared Phosphatidylethanolamine (PE) profiles within aqueous humor (AH) and trabecular meshwork (TM) of normotensive and hypertensive DBA/2J mice using direct infusion triple quadrupole mass spectrometry.
Institute:University of Miami
Last Name:Bhattacharya
First Name:Sanjoy
Address:McKnight Vision Research Building, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, 1638 NW 10th Avenue, Room 706A, Miami, Florida 33136
Email:Sbhattacharya@med.miami.edu
Phone:305-482-4103

Subject:

Subject ID:SU000602
Subject Type:Animal
Subject Species:Mus musculus
Taxonomy ID:10090
Genotype Strain:DBA/2J
Species Group:Mammal

Factors:

Subject type: Animal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Tissue Location Sex Phenotype
SA030717DBA2J 10M FAHL5AH Female Hypertensive
SA030718DBA2J 8-8.5M FAH4L5AH Female Hypertensive
SA030719DBA2J 12M FAHL2AH Female Hypertensive
SA030720DBA2J 7.5M FAHL2AH Female Normotensive
SA030721DBA2J 3M FAHAH Female Normotensive
SA030722DBA2J 10M MAHL5AH Male Hypertensive
SA030723DBA2J 8-8.5M MAH4L5AH Male Hypertensive
SA030724DBA2J 12M MAHL2AH Male Hypertensive
SA030725DBA2J 7.5M MAH2L2AH Male Normotensive
SA030726DBA2J 3M MAHL2AH Male Normotensive
SA030727DBA2J 10M FTML5TM Female Hypertensive
SA030728DBA2J 8-8.5M FTM4L5TM Female Hypertensive
SA030729DBA2J 12M FTML2TM Female Hypertensive
SA030730DBA2J 3M FTML3TM Female Normotensive
SA030731DBA2J 7.5M FTML2TM Female Normotensive
SA030732DBA2J 8-8.5M MTM4L5TM Male Hypertensive
SA030733DBA2J 10M MTML4TM Male Hypertensive
SA030734DBA2J 12M MTML2TM Male Hypertensive
SA030735DBA2J 7.5M MTM2L3TM Male Normotensive
SA030736DBA2J 3M MTML4TM Male Normotensive
Showing results 1 to 20 of 20

Collection:

Collection ID:CO000596
Collection Summary:DBA/2J mice were anesthetized by an intraperitoneal injection of a cocktail of Ketamine and Xylazine. A drop of tetracaine hydrochloride ophthalmic solution (0.5%, Bausch & Lomb, USA) was used to anesthetize the ocular surface prior to AH procurement. Normotensive and hypertensive AH was obtained from the anterior chamber of DBA/2J mice via paracentesis using a syringe (catalog no. 7635-01 Hamilton, Reno, Nevada) with a small 33 gauge removable needle (701RN, catalog no. 7803-05 Hamilton). TM samples were obtained through surgical removal after euthanization with carbon dioxide and adhering to animal procedures approved by the IACUC.
Sample Type:Eye tissue

Treatment:

Treatment ID:TR000616
Treatment Summary:No treatment was performed on the mice.

Sample Preparation:

Sampleprep ID:SP000609
Sampleprep Summary:A total of ~3 μl of AH and ∼0.5-1 mm3 of TM per mice was used for phospholipid extraction using modified Bligh and Dyer extraction method[13,14]. Phospholipids extracted in the lower organic phase were dried using a Speed-Vac (Model 7810014; Labconco, Kansas City, MO), and then flushed with argon gas for oxidation prevention. Proteins procured from the upper aqueous phase were quantified using a suitable modification of Bradford’s method.

Combined analysis:

Analysis ID AN000890
Analysis type MS
Chromatography type Reversed phase
Chromatography system TSQ Quantum Access Max
Column None
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name Thermo Quantiva Access Max
Ion Mode NEGATIVE
Units pmol/ ug of protein

Chromatography:

Chromatography ID:CH000633
Instrument Name:TSQ Quantum Access Max
Column Name:None
Chromatography Type:Reversed phase

MS:

MS ID:MS000792
Analysis ID:AN000890
Instrument Name:Thermo Quantiva Access Max
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:NEGATIVE
  logo