Summary of study ST000691

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000490. The data can be accessed directly via it's Project DOI: 10.21228/M8QK6J This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000691
Study TitleMetabolomics of diabetic nephropathy
Study TypeMS analysis
Study SummaryMetabolomics of diabetic plasma at baseline for Chronic Kidney Disease progression studies; all samples taken from progressors.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups2
Total Subjects17
Raw Data AvailableYes
Raw Data File Type(s).wiff
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8QK6J
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000490
Project DOI:doi: 10.21228/M8QK6J
Project Title:Diabetis and Chronic Kidney Disease progression
Project Type:MS analysis
Project Summary:Metabolomics of Chronic Kidney Disease progression
Institute:University of Michigan
Department:UMich Internal Medicine
Laboratory:Pennathur Lab
Last Name:Pennathur
First Name:Subramaniam
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:spennath@umich.edu
Phone:734 615 5757

Subject:

Subject ID:SU000714
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Progression
SA039183S00020129Pooled plasma
SA039184S00014332Y
SA039185S00014331Y
SA039186S00014333Y
SA039187S00014335Y
SA039188S00014336Y
SA039189S00014330Y
SA039190S00014334Y
SA039191S00014329Y
SA039192S00014324Y
SA039193S00014323Y
SA039194S00014322Y
SA039195S00014325Y
SA039196S00014326Y
SA039197S00014328Y
SA039198S00014327Y
SA039199S00014321Y
Showing results 1 to 17 of 17

Collection:

Collection ID:CO000708
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000728
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000721
Sampleprep Summary:-
Sampleprep Protocol Filename:A003_-_Untargeted_Metabolomics.pdf

Combined analysis:

Analysis ID AN001067 AN001068
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent Agilent
Column Waters Acquity HSS T3 (50 x 2.1mm, 1.8um) Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode NEGATIVE POSITIVE
Units peak area normalized peak area normalized

Chromatography:

Chromatography ID:CH000754
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS000962
Analysis ID:AN001067
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
  
MS ID:MS000963
Analysis ID:AN001068
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
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