Summary of Study ST000814
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000579. The data can be accessed directly via it's Project DOI: 10.21228/M8TM29 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST000814 |
Study Title | Hormones & Cognition/Aging/Placebo |
Study Type | MS analysis |
Study Summary | The goal is to look at measures of overall metabolic state in relationship to hormonal environment and measures of mood/depression or cognitive function (behavioral and functional MRI images). There are some relationships in this data set between glucose/insulin levels and cognitive function, and we would like to use the untargeted assays to further investigate this relationship. Factors related to visual/spatial memory are included in the design. Factors 1 and 2 (Left Hippocampus, Right Hippocampus) are levels of activation in the hippocampus during a visual memory task, (data missing for some of the samples). Factors 3-5 (BVMT % Retained, BVMT Learning T, BVMT Delay T) are results from a cognitive test of spatial memory function. |
Institute | University of Michigan |
Department | Biomedical Research Core Facilities |
Laboratory | Metabolomics core |
Last Name | Kachman |
First Name | Maureen |
Address | 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 |
mkachman@med.umich.edu | |
Phone | (734) 232-8175 |
Submit Date | 2017-07-13 |
Num Groups | 72 |
Total Subjects | 28 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2017-10-11 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR000579 |
Project DOI: | doi: 10.21228/M8TM29 |
Project Title: | Hormones & Cognition/Aging |
Project Type: | MS analysis |
Project Summary: | Untargeted metabolomic assay of early menopause |
Institute: | University of Michigan |
Department: | Psychiatry |
Laboratory: | Berent-Spillson Lab |
Last Name: | Berent-Spillson |
First Name: | Alison |
Address: | Ann Arbor, MI |
Email: | berent@umich.edu |
Phone: | 734-717-6399 |
Subject:
Subject ID: | SU000840 |
Subject Type: | HUMAN |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Species Group: | Mammals |
Factors:
Subject type: HUMAN; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | Factor |
---|---|---|
SA045134 | S00014759 | data |
SA045135 | S00014760 | data |
SA045136 | S00014758 | data |
SA045137 | S00014757 | data |
SA045138 | S00014756 | data |
SA045139 | S00014761 | data |
SA045140 | S00014763 | data |
SA045141 | S00014766 | data |
SA045142 | S00020133 | data |
SA045143 | S00014765 | data |
SA045144 | S00014764 | data |
SA045145 | S00014755 | data |
SA045146 | S00014762 | data |
SA045147 | S00014754 | data |
SA045148 | S00014745 | data |
SA045149 | S00014746 | data |
SA045150 | S00014744 | data |
SA045151 | S00014743 | data |
SA045152 | S00014741 | data |
SA045153 | S00014742 | data |
SA045154 | S00014747 | data |
SA045155 | S00014748 | data |
SA045156 | S00014752 | data |
SA045157 | S00014753 | data |
SA045158 | S00014751 | data |
SA045159 | S00014750 | data |
SA045160 | S00014749 | data |
SA045161 | S00014740 | data |
Showing results 1 to 28 of 28 |
Collection:
Collection ID: | CO000834 |
Collection Summary: | none |
Sample Type: | Blood |
Treatment:
Treatment ID: | TR000854 |
Treatment Summary: | -none |
Sample Preparation:
Sampleprep ID: | SP000847 |
Sampleprep Summary: | - |
Sampleprep Protocol Filename: | A003_-_Untargeted_Metabolomics.pdf |
Combined analysis:
Analysis ID | AN001288 | AN001289 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent | Agilent |
Column | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6530 QTOF | Agilent 6530 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | peak area | peak area |
Chromatography:
Chromatography ID: | CH000904 |
Instrument Name: | Agilent |
Column Name: | Waters Acquity HSS T3 (50 x 2.1mm,1.8um) |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS001181 |
Analysis ID: | AN001288 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | NEGATIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |
MS ID: | MS001182 |
Analysis ID: | AN001289 |
Instrument Name: | Agilent 6530 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
Ion Mode: | POSITIVE |
Analysis Protocol File: | A003_-_Untargeted_Metabolomics.pdf |