Summary of Study ST000842

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000599. The data can be accessed directly via it's Project DOI: 10.21228/M87Q3F This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000842
Study TitleMuscle and plasma before and after exercise
Study TypeMS analysis
Study SummaryPA samples: matched plasma and muscle samples from an obese subject mild-intensity exercise training study, V1 is the first visit (untrained), V4 is post 3 months training, 1 day after exercise and V5 is post 3 months training, 3 days after last exercise.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-08-02
Num Groups8
Total Subjects11
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2018-02-07
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M87Q3F
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000599
Project DOI:doi: 10.21228/M87Q3F
Project Title:Prelim data for NIH exercise consortium
Project Type:MS analysis
Project Summary:Plasma samples before and after exercise training in obese adults
Institute:University of Michigan
Department:Kinesiology
Laboratory:Horowitz Lab
Last Name:Horowitz
First Name:Jeff
Address:Ann Arbor, MI
Email:jeffhoro@umich.edu
Phone:734-647-3354

Subject:

Subject ID:SU000869
Subject Type:HUMAN
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: HUMAN; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Sample type Visit #
SA046721S00020412Muscles 1
SA046722S00020382Muscles 1
SA046723S00020418Muscles 1
SA046724S00020400Muscles 1
SA046725S00020406Muscles 1
SA046726S00020376Muscles 1
SA046727S00020394Muscles 1
SA046728S00020388Muscles 1
SA046729S00020370Muscles 1
SA046730S00020424Muscles 1
SA046731S00020371Muscles 4
SA046732S00020401Muscles 4
SA046733S00020419Muscles 4
SA046734S00020383Muscles 4
SA046735S00020425Muscles 4
SA046736S00020407Muscles 4
SA046737S00020395Muscles 4
SA046738S00020389Muscles 4
SA046739S00020413Muscles 4
SA046740S00020377Muscles 4
SA046741S00020396Muscles 5
SA046742S00020414Muscles 5
SA046743S00020408Muscles 5
SA046744S00020426Muscles 5
SA046745S00020402Muscles 5
SA046746S00020372Muscles 5
SA046747S00020378Muscles 5
SA046748S00020384Muscles 5
SA046749S00020420Muscles 5
SA046750S00020390Muscles 5
SA046751S00020421Plasma 1
SA046752S00020379Plasma 1
SA046753S00020391Plasma 1
SA046754S00020409Plasma 1
SA046755S00020397Plasma 1
SA046756S00020403Plasma 1
SA046757S00020373Plasma 1
SA046758S00020385Plasma 1
SA046759S00020367Plasma 1
SA046760S00020415Plasma 1
SA046761S00020422Plasma 4
SA046762S00020416Plasma 4
SA046763S00020398Plasma 4
SA046764S00020380Plasma 4
SA046765S00020374Plasma 4
SA046766S00020368Plasma 4
SA046767S00020392Plasma 4
SA046768S00020386Plasma 4
SA046769S00020410Plasma 4
SA046770S00020404Plasma 4
SA046771S00020375Plasma 5
SA046772S00020405Plasma 5
SA046773S00020369Plasma 5
SA046774S00020417Plasma 5
SA046775S00020399Plasma 5
SA046776S00020423Plasma 5
SA046777S00020387Plasma 5
SA046778S00020393Plasma 5
SA046779S00020411Plasma 5
SA046780S00020381Plasma 5
SA046781S00020456Pooled sample Pooled muscles
SA046782S00020457Pooled sample Pooled plasma
Showing results 1 to 62 of 62

Collection:

Collection ID:CO000863
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000883
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000876
Sampleprep Summary:-
Sampleprep Protocol Filename:A003_-_Untargeted_Metabolomics.pdf

Chromatography:

Chromatography ID:CH000948
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Chromatography Type:Reversed phase
  
Chromatography ID:CH000949
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase
  
Chromatography ID:CH000950
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (100 x 2.1mm,1.8um)
Column Temperature:40
Flow Rate:0.250 mL/min
Solvent A:100% water; 5 mM ammonium acetate, pH 9.9
Solvent B:100% acetonitrile
Chromatography Type:Reversed phase
  
Chromatography ID:CH000951
Instrument Name:Agilent
Column Name:Phenomenex Luna NH2 (150 x 1mm,3um)
Flow Rate:0.075 mL/min
Solvent A:100% water; 5 mM ammonium acetate, pH 9.9
Solvent B:100% acetonitrile
Chromatography Type:HILIC

Analysis:

Analysis ID:AN001356
Analysis Type:MS
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
Instrument Name:6530 Q-TOF LC/MS (Agilent)
Chromatography ID:CH000948
Num Factors:8
Num Metabolites:100
Rt Units:Minutes
Results File:ST000842_AN001356_Results.txt
Units:Counts
  
Analysis ID:AN001357
Analysis Type:MS
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
Instrument Name:6530 Q-TOF LC/MS (Agilent)
Chromatography ID:CH000948
Num Factors:8
Num Metabolites:116
Rt Units:Minutes
Results File:ST000842_AN001357_Results.txt
Units:Counts
  
Analysis ID:AN001358
Analysis Type:MS
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
Instrument Name:TripleTOF 5600+ (Absciex)
Chromatography ID:CH000949
Num Factors:8
Num Metabolites:303
Rt Units:Minutes
Units:counts norm
  
Analysis ID:AN001359
Analysis Type:MS
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
Instrument Name:TripleTOF 5600+ (Absciex)
Chromatography ID:CH000949
Num Factors:8
Num Metabolites:503
Rt Units:Minutes
Units:counts norm
  
Analysis ID:AN001360
Analysis Type:MS
Analysis Protocol File:A008_-_Acyl_Carnitines.pdf
Instrument Name:6490A QQQ LC/MS (Agilent)
Chromatography ID:CH000950
Num Factors:8
Num Metabolites:27
Units:pmol/mg
  
Analysis ID:AN001361
Analysis Type:MS
Analysis Protocol File:A008_-_Acyl_Carnitines.pdf
Instrument Name:6490A QQQ LC/MS (Agilent)
Chromatography ID:CH000950
Num Factors:8
Num Metabolites:28
Units:uM
  
Analysis ID:AN001362
Analysis Type:MS
Analysis Protocol File:A011_-_Glycolysis-TCA-nucleotides.pdf
Instrument Name:6520B Q-TOF LC/MS (Agilent)
Chromatography ID:CH000951
Num Factors:8
Num Metabolites:8
Units:counts
  
Analysis ID:AN001363
Analysis Type:MS
Analysis Protocol File:A011_-_Glycolysis-TCA-nucleotides.pdf
Instrument Name:6520B Q-TOF LC/MS (Agilent)
Chromatography ID:CH000951
Num Factors:8
Num Metabolites:23
Units:ug/100 mg
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