Summary of Study ST001031

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000689. The data can be accessed directly via it's Project DOI: 10.21228/M8MH45 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Study ID	ST001031
Study Title	Metabolome analysis on multi-connected biparental chromosome segment substitution line populations in rice
Study Summary	rice flag leaves at heading stage from three chromosome substitution line populations, which were respectively constructed by introducing genomic segments from japonica cultivar Niponbare, indica cultivar Minghui 63 and wild accession ACC10, to an indica cultivar Zhenshan 97, were collected. Metabolomics profile was conducted to generate quantitative trait loci that may affect contents of metabolites, and candidate genes were assigned.
Institute	Huazhong Agricultural University
Last Name	Chen
First Name	Jie
Address	#1 Shizishan street
Email	lqlcj@126.com
Phone	18986265127
Submit Date	2018-08-06
Raw Data Available	Yes
Raw Data File Type(s)	wiff
Analysis Type Detail	LC-MS
Release Date	2019-09-23
Release Version	1

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Project:

Project ID:	PR000689
Project DOI:	doi: 10.21228/M8MH45
Project Title:	Metabolome analysis on multi-connected biparental chromosome segment substitution line populations in rice
Project Summary:	Rice flag leaves at heading stage from three chromosome substitution line populations, which were respectively constructed by introducing genomic segments from japonica cultivar Niponbare, indica cultivar Minghui 63 and wild accession ACC10, to an indica cultivar Zhenshan 97, were collected. Metabolomics profile was conducted to generate quantitative trait loci that may affect contents of metabolites, and candidate genes were assigned.
Institute:	Huazhong Agricultural University
Last Name:	Chen
First Name:	Jie
Address:	#1 Shizishan street, wuhan, hubei, 430070, China
Email:	lqlcj@126.com
Phone:	18986265127

Subject:

Subject ID:	SU001070
Subject Type:	Plant
Subject Species:	Oryza sativa Japonica Group
Taxonomy ID:	39947
Species Group:	Plants

Factors:

Subject type: Plant; Subject species: Oryza sativa Japonica Group (Factor headings shown in green)

mb_sample_id	local_sample_id	Population
SA068794	WCD082	A/Z
SA068795	WCD083	A/Z
SA068796	WCD081	A/Z
SA068797	WCD079	A/Z
SA068798	WCD078	A/Z
SA068799	WCD084	A/Z
SA068800	WCD080	A/Z
SA068801	WCD085	A/Z
SA068802	WCD090	A/Z
SA068803	WCD092	A/Z
SA068804	WCD089	A/Z
SA068805	WCD087	A/Z
SA068806	WCD086	A/Z
SA068807	WCD077	A/Z
SA068808	WCD075	A/Z
SA068809	WCD066	A/Z
SA068810	WCD067	A/Z
SA068811	WCD065	A/Z
SA068812	WCD064	A/Z
SA068813	WCD062	A/Z
SA068814	WCD063	A/Z
SA068815	WCD068	A/Z
SA068816	WCD069	A/Z
SA068817	WCD074	A/Z
SA068818	WCD093	A/Z
SA068819	WCD073	A/Z
SA068820	WCD071	A/Z
SA068821	WCD070	A/Z
SA068822	WCD076	A/Z
SA068823	WCD095	A/Z
SA068824	WCD114	A/Z
SA068825	WCD115	A/Z
SA068826	WCD113	A/Z
SA068827	WCD112	A/Z
SA068828	WCD110	A/Z
SA068829	WCD111	A/Z
SA068830	WCD116	A/Z
SA068831	WCD117	A/Z
SA068832	WCD121	A/Z
SA068833	WCD001	A/Z
SA068834	WCD120	A/Z
SA068835	WCD119	A/Z
SA068836	WCD118	A/Z
SA068837	WCD109	A/Z
SA068838	WCD108	A/Z
SA068839	WCD099	A/Z
SA068840	WCD100	A/Z
SA068841	WCD098	A/Z
SA068842	WCD097	A/Z
SA068843	WCD061	A/Z
SA068844	WCD096	A/Z
SA068845	WCD101	A/Z
SA068846	WCD102	A/Z
SA068847	WCD106	A/Z
SA068848	WCD107	A/Z
SA068849	WCD105	A/Z
SA068850	WCD104	A/Z
SA068851	WCD103	A/Z
SA068852	WCD094	A/Z
SA068853	WCD088	A/Z
SA068854	WCD021	A/Z
SA068855	WCD022	A/Z
SA068856	WCD020	A/Z
SA068857	WCD019	A/Z
SA068858	WCD017	A/Z
SA068859	WCD018	A/Z
SA068860	WCD023	A/Z
SA068861	WCD024	A/Z
SA068862	WCD029	A/Z
SA068863	WCD030	A/Z
SA068864	WCD028	A/Z
SA068865	WCD027	A/Z
SA068866	WCD025	A/Z
SA068867	WCD026	A/Z
SA068868	WCD016	A/Z
SA068869	WCD015	A/Z
SA068870	WCD006	A/Z
SA068871	WCD007	A/Z
SA068872	WCD060	A/Z
SA068873	WCD004	A/Z
SA068874	WCD002	A/Z
SA068875	WCD003	A/Z
SA068876	WCD008	A/Z
SA068877	WCD009	A/Z
SA068878	WCD013	A/Z
SA068879	WCD014	A/Z
SA068880	WCD012	A/Z
SA068881	WCD011	A/Z
SA068882	WCD010	A/Z
SA068883	WCD031	A/Z
SA068884	WCD005	A/Z
SA068885	WCD051	A/Z
SA068886	WCD052	A/Z
SA068887	WCD050	A/Z
SA068888	WCD049	A/Z
SA068889	WCD047	A/Z
SA068890	WCD048	A/Z
SA068891	WCD053	A/Z
SA068892	WCD054	A/Z
SA068893	WCD059	A/Z

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Collection:

Collection ID:	CO001064
Collection Summary:	rice flag leaves were collected at heading stage
Sample Type:	Plant

Treatment:

Treatment ID:	TR001084
Treatment Summary:	N/A

Sample Preparation:

Sampleprep ID:	SP001077
Sampleprep Summary:	Samples were snap-frozen in liquid nitrogen and stored at -80C

Chromatography:

Chromatography ID:	CH001190
Instrument Name:	Shimadzu CBM20A
Column Name:	shim-pack VP-ODS C18
Chromatography Type:	Reversed phase

Analysis:

Analysis ID:	AN001691
Analysis Type:	MS
Instrument Name:	ABI Sciex 4000 Qtrap
Chromatography ID:	CH001190
Num Factors:	3
Num Metabolites:	277
Rt Units:	Minutes
Units:	peak area