Summary of Study ST001031

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000689. The data can be accessed directly via it's Project DOI: 10.21228/M8MH45 This work is supported by NIH grant, U2C- DK119886.

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Study IDST001031
Study TitleMetabolome analysis on multi-connected biparental chromosome segment substitution line populations in rice
Study Summaryrice flag leaves at heading stage from three chromosome substitution line populations, which were respectively constructed by introducing genomic segments from japonica cultivar Niponbare, indica cultivar Minghui 63 and wild accession ACC10, to an indica cultivar Zhenshan 97, were collected. Metabolomics profile was conducted to generate quantitative trait loci that may affect contents of metabolites, and candidate genes were assigned.
Institute
Huazhong Agricultural University
Last NameChen
First NameJie
Address#1 Shizishan street
Emaillqlcj@126.com
Phone18986265127
Submit Date2018-08-06
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2019-09-23
Release Version1
Jie Chen Jie Chen
https://dx.doi.org/10.21228/M8MH45
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000689
Project DOI:doi: 10.21228/M8MH45
Project Title:Metabolome analysis on multi-connected biparental chromosome segment substitution line populations in rice
Project Summary:Rice flag leaves at heading stage from three chromosome substitution line populations, which were respectively constructed by introducing genomic segments from japonica cultivar Niponbare, indica cultivar Minghui 63 and wild accession ACC10, to an indica cultivar Zhenshan 97, were collected. Metabolomics profile was conducted to generate quantitative trait loci that may affect contents of metabolites, and candidate genes were assigned.
Institute:Huazhong Agricultural University
Last Name:Chen
First Name:Jie
Address:#1 Shizishan street, wuhan, hubei, 430070, China
Email:lqlcj@126.com
Phone:18986265127

Subject:

Subject ID:SU001070
Subject Type:Plant
Subject Species:Oryza sativa Japonica Group
Taxonomy ID:39947

Factors:

Subject type: Plant; Subject species: Oryza sativa Japonica Group (Factor headings shown in green)

mb_sample_id local_sample_id Population
SA068794WCD082A/Z
SA068795WCD083A/Z
SA068796WCD081A/Z
SA068797WCD079A/Z
SA068798WCD078A/Z
SA068799WCD084A/Z
SA068800WCD080A/Z
SA068801WCD085A/Z
SA068802WCD090A/Z
SA068803WCD092A/Z
SA068804WCD089A/Z
SA068805WCD087A/Z
SA068806WCD086A/Z
SA068807WCD077A/Z
SA068808WCD075A/Z
SA068809WCD066A/Z
SA068810WCD067A/Z
SA068811WCD065A/Z
SA068812WCD064A/Z
SA068813WCD062A/Z
SA068814WCD063A/Z
SA068815WCD068A/Z
SA068816WCD069A/Z
SA068817WCD074A/Z
SA068818WCD093A/Z
SA068819WCD073A/Z
SA068820WCD071A/Z
SA068821WCD070A/Z
SA068822WCD076A/Z
SA068823WCD095A/Z
SA068824WCD114A/Z
SA068825WCD115A/Z
SA068826WCD113A/Z
SA068827WCD112A/Z
SA068828WCD110A/Z
SA068829WCD111A/Z
SA068830WCD116A/Z
SA068831WCD117A/Z
SA068832WCD121A/Z
SA068833WCD001A/Z
SA068834WCD120A/Z
SA068835WCD119A/Z
SA068836WCD118A/Z
SA068837WCD109A/Z
SA068838WCD108A/Z
SA068839WCD099A/Z
SA068840WCD100A/Z
SA068841WCD098A/Z
SA068842WCD097A/Z
SA068843WCD061A/Z
SA068844WCD096A/Z
SA068845WCD101A/Z
SA068846WCD102A/Z
SA068847WCD106A/Z
SA068848WCD107A/Z
SA068849WCD105A/Z
SA068850WCD104A/Z
SA068851WCD103A/Z
SA068852WCD094A/Z
SA068853WCD088A/Z
SA068854WCD021A/Z
SA068855WCD022A/Z
SA068856WCD020A/Z
SA068857WCD019A/Z
SA068858WCD017A/Z
SA068859WCD018A/Z
SA068860WCD023A/Z
SA068861WCD024A/Z
SA068862WCD029A/Z
SA068863WCD030A/Z
SA068864WCD028A/Z
SA068865WCD027A/Z
SA068866WCD025A/Z
SA068867WCD026A/Z
SA068868WCD016A/Z
SA068869WCD015A/Z
SA068870WCD006A/Z
SA068871WCD007A/Z
SA068872WCD060A/Z
SA068873WCD004A/Z
SA068874WCD002A/Z
SA068875WCD003A/Z
SA068876WCD008A/Z
SA068877WCD009A/Z
SA068878WCD013A/Z
SA068879WCD014A/Z
SA068880WCD012A/Z
SA068881WCD011A/Z
SA068882WCD010A/Z
SA068883WCD031A/Z
SA068884WCD005A/Z
SA068885WCD051A/Z
SA068886WCD052A/Z
SA068887WCD050A/Z
SA068888WCD049A/Z
SA068889WCD047A/Z
SA068890WCD048A/Z
SA068891WCD053A/Z
SA068892WCD054A/Z
SA068893WCD059A/Z
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Collection:

Collection ID:CO001064
Collection Summary:rice flag leaves were collected at heading stage
Sample Type:Plant

Treatment:

Treatment ID:TR001084
Treatment Summary:N/A

Sample Preparation:

Sampleprep ID:SP001077
Sampleprep Summary:Samples were snap-frozen in liquid nitrogen and stored at -80C

Combined analysis:

Analysis ID AN001691
Analysis type MS
Chromatography type Reversed phase
Chromatography system Shimadzu CBM20A
Column shim-pack VP-ODS C18
MS Type ESI
MS instrument type Triple quadrupole
MS instrument name ABI Sciex 4000 QTrap
Ion Mode POSITIVE
Units peak area

Chromatography:

Chromatography ID:CH001190
Instrument Name:Shimadzu CBM20A
Column Name:shim-pack VP-ODS C18
Chromatography Type:Reversed phase

MS:

MS ID:MS001566
Analysis ID:AN001691
Instrument Name:ABI Sciex 4000 QTrap
Instrument Type:Triple quadrupole
MS Type:ESI
Ion Mode:POSITIVE
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