Summary of Study ST001083

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000724. The data can be accessed directly via it's Project DOI: 10.21228/M83D5V This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001083
Study TitleCombined NMR and MS Analysis of PC patien serum (part-III)
Study SummarySerum of two groups of patients were analyzed using MS and NMR to find predictive markers of recurrence. Study Design factor Sample type represents samples with Recurrence (R) or No Recurrence (NR) of Cancer.
Institute
Georgia Institute of Technology
Last NameFernandez
First NameFacundo
Address901 Atlantic Dr NE, Atlanta, GA, 30332, USA
Emailfernandez@gatech.edu
Phone404-385-4432
Submit Date2018-10-19
Analysis Type DetailNMR
Release Date2019-10-11
Release Version1
Facundo Fernandez Facundo Fernandez
https://dx.doi.org/10.21228/M83D5V
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000724
Project DOI:doi: 10.21228/M83D5V
Project Title:Preoperative Metabolic Signatures of Prostate Cancer Recurrence Following Radical Prostatectomy
Project Summary:Prostate cancer patient serum was analyzed using HILIC and RP LC/MS and NMR.
Institute:Georgia Institute of Technology
Last Name:Fernandez
First Name:Facundo
Address:901 Atlantic Dr NE, Atlanta, GA, 30332, USA
Email:fernandez@gatech.edu
Phone:404-385-4432

Subject:

Subject ID:SU001127
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Age Or Age Range:44-70
Gender:Male

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Sample type
SA073280S33No Recurrence
SA073281S36No Recurrence
SA073282S38No Recurrence
SA073283S32No Recurrence
SA073284S30No Recurrence
SA073285S27No Recurrence
SA073286S28No Recurrence
SA073287S29No Recurrence
SA073288S41No Recurrence
SA073289S42No Recurrence
SA073290S72No Recurrence
SA073291S67No Recurrence
SA073292S66No Recurrence
SA073293S47No Recurrence
SA073294S46No Recurrence
SA073295S1No Recurrence
SA073296S44No Recurrence
SA073297S26No Recurrence
SA073298S31No Recurrence
SA073299S9No Recurrence
SA073300S16No Recurrence
SA073301S17No Recurrence
SA073302S5No Recurrence
SA073303S4No Recurrence
SA073304S2No Recurrence
SA073305S3No Recurrence
SA073306S18No Recurrence
SA073307S12No Recurrence
SA073308S24No Recurrence
SA073309S22No Recurrence
SA073310S21No Recurrence
SA073311S19No Recurrence
SA073312S71Recurrence
SA073313S69Recurrence
SA073314S68Recurrence
SA073315S65Recurrence
SA073316S63Recurrence
SA073317S64Recurrence
SA073318S62Recurrence
SA073319S82Recurrence
SA073320S75Recurrence
SA073321S78Recurrence
SA073322S79Recurrence
SA073323S83Recurrence
SA073324S76Recurrence
SA073325S80Recurrence
SA073326S74Recurrence
SA073327S73Recurrence
SA073328S43Recurrence
SA073329S35Recurrence
SA073330S37Recurrence
SA073331S39Recurrence
SA073332S45Recurrence
SA073333S25Recurrence
SA073334S20Recurrence
SA073335S10Recurrence
SA073336S11Recurrence
SA073337S15Recurrence
SA073338S48Recurrence
SA073339S49Recurrence
SA073340S58Recurrence
SA073341S59Recurrence
SA073342S60Recurrence
SA073343S57Recurrence
SA073344S54Recurrence
SA073345S50Recurrence
SA073346S51Recurrence
SA073347S52Recurrence
SA073348S61Recurrence
Showing results 1 to 69 of 69

Collection:

Collection ID:CO001121
Collection Summary:After Emory Institutional Review Board (IRB) approval, patients were consented and blood collected in SST Serum Separation Tubes: Hemogard (Fisher Scientific). Serum was separated by centrifugation at 1300 rcf for 20 min at 4 °C. Serum aliquots were stored long term in liquid nitrogen until removed for analysis.
Sample Type:Blood (serum)
Storage Conditions:Described in summary

Treatment:

Treatment ID:TR001141
Treatment Summary:N/A

Sample Preparation:

Sampleprep ID:SP001134
Sampleprep Summary:Proteins were precipitated from serum samples using either MeOH (for HILIC LC/MS and NMR) or Isopropanol (for RP LC/MS).

Analysis:

Analysis ID:AN001768
Analysis Type:NMR
Num Factors:2

NMR:

NMR ID:NM000132
Analysis ID:AN001768
Instrument Name:Bruker Avance III HD 600 MHz
Instrument Type:FT-NMR
NMR Experiment Type:1D 1H
Spectrometer Frequency:600 MHz
NMR Solvent:D20
NMR Tube Size:5mm
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