Summary of Study ST001111
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000742. The data can be accessed directly via it's Project DOI: 10.21228/M8RX01 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST001111 |
| Study Title | Breast Cancer Lipidomics Tissue |
| Study Summary | Screening of Breast Cancer tissue samples for alteration in the lipidome using high resolution mass spectrometer,and mapping of these changes to clinico-pathological data to search for potential bio markers |
| Institute | Baylor College of Medicine |
| Last Name | Sreekumar |
| First Name | Arun |
| Address | 1 Baylor Plaza |
| Arun.Sreekumar@bcm.edu | |
| Phone | 7137983139 |
| Submit Date | 2017-12-06 |
| Analysis Type Detail | LC-MS |
| Release Date | 2019-01-22 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000742 |
| Project DOI: | doi: 10.21228/M8RX01 |
| Project Title: | Breast Cancer Lipidomics Tissue data |
| Project Summary: | Screening of Breast Cancer tissue samples for alteration in the lipidome using high resolution mass spectrometer,and mapping of these changes to clinico-pathological data to search for potential bio markers |
| Institute: | Baylor College of Medicine |
| Last Name: | Sreekumar |
| First Name: | Arun |
| Address: | 1 Baylor Plaza |
| Email: | Arun.Sreekumar@bcm.edu |
| Phone: | 7137983144 |
Subject:
| Subject ID: | SU001156 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Sample |
|---|---|---|
| SA075743 | 35 | Benign |
| SA075744 | 65 | Benign |
| SA075745 | 102 | Benign |
| SA075746 | 81 | Benign |
| SA075747 | 62 | Benign |
| SA075748 | 104 | Benign |
| SA075749 | 66 | Benign |
| SA075750 | 87 | Benign |
| SA075751 | 29 | Benign |
| SA075752 | 67 | Benign |
| SA075753 | 31 | Benign |
| SA075754 | 83 | Benign |
| SA075755 | 95 | Benign |
| SA075756 | 50 | Benign |
| SA075757 | 49 | Benign |
| SA075758 | 51 | Benign |
| SA075759 | 52 | Benign |
| SA075760 | 91 | Benign |
| SA075761 | 48 | Benign |
| SA075762 | 47 | Benign |
| SA075763 | 27 | Benign |
| SA075764 | 94 | Benign |
| SA075765 | 93 | Benign |
| SA075766 | 45 | Benign |
| SA075767 | 96 | Benign |
| SA075768 | 28 | Benign |
| SA075769 | 11 | Benign |
| SA075770 | 114 | Benign |
| SA075771 | 79 | Benign |
| SA075772 | 70 | Benign |
| SA075773 | 107 | Benign |
| SA075774 | 78 | Benign |
| SA075775 | 77 | Benign |
| SA075776 | 3 | Benign |
| SA075777 | 118 | Benign |
| SA075778 | 5 | Benign |
| SA075779 | 6 | Benign |
| SA075780 | 15 | Benign |
| SA075781 | 14 | Benign |
| SA075782 | 68 | Benign |
| SA075783 | 16 | Benign |
| SA075784 | 109 | Benign |
| SA075785 | 108 | Benign |
| SA075786 | 25 | Benign |
| SA075787 | 20 | Benign |
| SA075788 | 21 | Benign |
| SA075789 | 17 | Benign |
| SA075790 | 18 | Benign |
| SA075791 | 85 | Cancer |
| SA075792 | 86 | Cancer |
| SA075793 | 82 | Cancer |
| SA075794 | 76 | Cancer |
| SA075795 | 84 | Cancer |
| SA075796 | 80 | Cancer |
| SA075797 | 101 | Cancer |
| SA075798 | 111 | Cancer |
| SA075799 | 110 | Cancer |
| SA075800 | 106 | Cancer |
| SA075801 | 112 | Cancer |
| SA075802 | 113 | Cancer |
| SA075803 | 117 | Cancer |
| SA075804 | 116 | Cancer |
| SA075805 | 115 | Cancer |
| SA075806 | 105 | Cancer |
| SA075807 | 103 | Cancer |
| SA075808 | 92 | Cancer |
| SA075809 | 90 | Cancer |
| SA075810 | 89 | Cancer |
| SA075811 | 98 | Cancer |
| SA075812 | 99 | Cancer |
| SA075813 | 75 | Cancer |
| SA075814 | 100 | Cancer |
| SA075815 | 88 | Cancer |
| SA075816 | 60 | Cancer |
| SA075817 | 34 | Cancer |
| SA075818 | 33 | Cancer |
| SA075819 | 32 | Cancer |
| SA075820 | 30 | Cancer |
| SA075821 | 36 | Cancer |
| SA075822 | 37 | Cancer |
| SA075823 | 40 | Cancer |
| SA075824 | 39 | Cancer |
| SA075825 | 38 | Cancer |
| SA075826 | 26 | Cancer |
| SA075827 | 24 | Cancer |
| SA075828 | 10 | Cancer |
| SA075829 | 9 | Cancer |
| SA075830 | 8 | Cancer |
| SA075831 | 12 | Cancer |
| SA075832 | 13 | Cancer |
| SA075833 | 23 | Cancer |
| SA075834 | 22 | Cancer |
| SA075835 | 19 | Cancer |
| SA075836 | 74 | Cancer |
| SA075837 | 41 | Cancer |
| SA075838 | 63 | Cancer |
| SA075839 | 61 | Cancer |
| SA075840 | 1 | Cancer |
| SA075841 | 59 | Cancer |
| SA075842 | 64 | Cancer |
Collection:
| Collection ID: | CO001150 |
| Collection Summary: | Tissue samples (breast epithelial and adjacent benign adipose tissue) collected by Roswell Park Cancer Institute and lipidomic screening performed at BCM |
| Sample Type: | Human breast epithelial and adipose tissue |
Treatment:
| Treatment ID: | TR001170 |
| Treatment Summary: | Breast cancer epithelial tissue and breast cancer adipose tissue |
Sample Preparation:
| Sampleprep ID: | SP001163 |
| Sampleprep Summary: | Refer to Badrajee et al, 2017 for sample prep details |
Chromatography:
| Chromatography ID: | CH001272 |
| Column Name: | Waters ACQUITY UPLC HSS T3 |
| Chromatography Type: | Reversed phase |
Analysis:
| Analysis ID: | AN001805 |
| Analysis Type: | MS |
| Chromatography ID: | CH001272 |
| Num Factors: | 3 |
| Num Metabolites: | 445 |
| Units: | signal intensity normalized |
| Analysis ID: | AN001806 |
| Analysis Type: | MS |
| Chromatography ID: | CH001272 |
| Num Factors: | 3 |
| Num Metabolites: | 332 |
| Units: | signal intensity normalized |
