Summary of Study ST001442
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000992. The data can be accessed directly via it's Project DOI: 10.21228/M8G68B This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001442 |
| Study Title | Human Optic Nerve Glaucoma and Control Lipidomes |
| Study Summary | We collected optic nerve samples from either glaucoma or control patients and performed lipidomics analysis on the optic nerve. |
| Institute | University of Miami |
| Last Name | Bhattacharya |
| First Name | Sanjoy |
| Address | 1638 NW 10th Avenue, Miami, Florida, 33136, USA |
| sbhattacharya@med.miami.edu | |
| Phone | 3054824103 |
| Submit Date | 2019-12-18 |
| Publications | Chauhan et al PMID: 31022733 PMCID: PMC6485987 doi: 10.1167/iovs.18-25802 Milbeck et al doi:https://doi.org/10.1167/iovs.61.6.60 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | raw(Thermo) |
| Analysis Type Detail | MS(Dir. Inf.) |
| Release Date | 2020-08-20 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000992 |
| Project DOI: | doi: 10.21228/M8G68B |
| Project Title: | Human Optic Nerve Glaucoma and Control Lipidomes |
| Project Summary: | We performed a lipidomics analysis of patient with either glaucoma or control with various causes of death. |
| Institute: | University of Miami |
| Department: | Bascom Palmer Eye Institute |
| Laboratory: | Sanjoy Bhattacharya Lab |
| Last Name: | Bhattacharya |
| First Name: | Sanjoy |
| Address: | 1638 NW 10th Avenue, Miami, Florida, 33136, USA |
| Email: | sbhattacharya@med.miami.edu |
| Phone: | 3054824103 |
Subject:
| Subject ID: | SU001516 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Mammals |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Group |
|---|---|---|
| SA122391 | 8N | Control |
| SA122392 | 10N | Control |
| SA122393 | 1N | Control |
| SA122394 | 7N | Control |
| SA122395 | 11N | Control |
| SA122396 | 9N | Control |
| SA122397 | 6N | Control |
| SA122398 | 2N | Control |
| SA122399 | 4N | Control |
| SA122400 | 3N | Control |
| SA122401 | 5N | Control |
| SA122402 | 9G | Glaucoma |
| SA122403 | 10G | Glaucoma |
| SA122404 | 12G | Glaucoma |
| SA122405 | 8G | Glaucoma |
| SA122406 | 11G | Glaucoma |
| SA122407 | 1G | Glaucoma |
| SA122408 | 3G | Glaucoma |
| SA122409 | 2G | Glaucoma |
| SA122410 | 4G | Glaucoma |
| SA122411 | 5G | Glaucoma |
| SA122412 | 6G | Glaucoma |
| SA122413 | 7G | Glaucoma |
| Showing results 1 to 23 of 23 |
Collection:
| Collection ID: | CO001511 |
| Collection Summary: | Samples were collected from the optic nerve and processed via LC-MS/MS. The optic nerve always came from diseased patients. |
| Sample Type: | Eye tissue |
Treatment:
| Treatment ID: | TR001531 |
| Treatment Summary: | No Treatment |
Sample Preparation:
| Sampleprep ID: | SP001524 |
| Sampleprep Summary: | Samples were collected via the Bligh-Diar method to extract lipids. Samples were speed-vacuumed and re-suspended in 1:1 chloroform-methanol. |
Chromatography:
| Chromatography ID: | CH001771 |
| Instrument Name: | none |
| Column Name: | none |
| Flow Rate: | 400 |
| Chromatography Type: | None (Direct infusion) |
Analysis:
| Analysis ID: | AN002410 |
| Analysis Type: | MS |
| Chromatography ID: | CH001771 |
| Num Factors: | 2 |
| Num Metabolites: | 4098 |
| Rt Units: | No RT data |
| Results File: | ST001442_AN002410_Results.txt |
| Units: | peak area |
