Summary of Study ST003940
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001844. The data can be accessed directly via it's Project DOI: 10.21228/M8C145 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST003940 |
| Study Title | Comprehensive Untargeted LC-MS Metabolomics Analysis of CYP19A1/SLC22A11/CYP11A1/HSD17B1/ABCG2 Knockout iPSCs |
| Study Summary | Human induced pluripotent stem cells (hIPSCs) are a key tool for biomedical research. Using CRISPR-cas9, null mutations were generated in KOLF2.2J hIPSCs and subsequently differentiated into primitive syncytium. In this study, a premature stop codon approach was employed to generate null alleles for CYP19A1, SLC22A11, CYP11A1, HSD17B1, and ABCG2, encoding key enzymes in the steroidogenesis pathway. Cells were cultured on media with and without DHEA-S, a stimulator of steroidogenesis and subsequently biochemically phenotyped. Biochemical phenotyping, i.e., untargeted metabolomics and lipidomics profiling, was performed on both differentiated wild-type controls and mutants, using a Thermo Scientific Q Exactive HF-X Mass Spectrometer coupled to a Thermo Vanquish Duo UHPLC Systems, equipped with an HES-II ionization source, using both reverse phase positive and HILIC negative methods. in this dataset, chemoselective derivatization was also performed on cell pellets and supernatant using Dansyl Hydrazine and Dansyl Chloride (DnHz and DnCl) using an in-house method to enhance detection of specific sub metabolomes (e.g., estrogens and other steroids) depending by their reactivity towards these reagents. This study contains data from both cell pellets and supernatant derived from the described cell lines. By comparing the metabolic and lipidomic profiles of these samples, phenotypic differences can be explained at a molecular level. This is particularly useful for non-transcriptional factors that can otherwise be difficult to characterize with transcriptomics approaches. This study was funded, in part, through UM1HG012651 which established the JAX MorPhiC Center, a MorPhiC Phase 1 Data Production Research and Development Center at the Jackson Laboratory for Genomic Medicine. |
| Institute | The Jackson Laboratory for Genomic Medicine |
| Last Name | Chi |
| First Name | Yuanye |
| Address | 10 Discovery Dr, Farmington, CT |
| yuanye.chi@jax.org | |
| Phone | 3395456866 |
| Submit Date | 2025-05-13 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2025-06-09 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR001844 |
| Project DOI: | doi: 10.21228/M8C145 |
| Project Title: | Molecular Phenotypes of Null Alleles in Cells |
| Project Summary: | The 2020 NHGRI Strategic Vision laid out a set of “bold predictions for human genomics by 2030” including elucidating the biological function(s) of each human gene. The Molecular Phenotypes of Null Alleles in Cells (MorPhiC) seeks to address this element of the strategic vision. Through the comprehensive generation of null alleles for every human gene and then cataloging the resulting molecular and cellular phenotypes, the mechanisms that relate gene function to observed phenotypes can be determined. Furthermore, the resulting catalog of knockouts and phenotypes will be made available for broader use by the biomedical community. Although multiple approaches can be leveraged to measure molecular and cellular phenotypes resulting from gene knockouts, metabolomics and lipidomics (i.e., biochemical phenotyping) provides an avenue to understand the link between gene function and phenotypes at a molecular level. This project consists of studies performed to biochemical phenotype of cell lines and other samples generated as part of MorPhiC. Resources: 1. https://www.nih.gov/news-events/news-releases/nih-initiative-systematically-investigate-establish-function-every-human-gene 2. https://www.genome.gov/research-funding/Funded-Programs-Projects/Molecular-Phenotypes-of-Null-Alleles-in-Cells |
| Institute: | The Jackson Laboratory for Genomic Medicine |
| Laboratory: | Shuzhao Li Lab |
| Last Name: | Chi |
| First Name: | Yuanye |
| Address: | 10 Discovery Dr, Farmington, CT |
| Email: | yuanye.chi@jax.org |
| Phone: | 3395456866 |
Subject:
| Subject ID: | SU004076 |
| Subject Type: | Cultured cells |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
Factors:
Subject type: Cultured cells; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Sample source | Harvest |
|---|---|---|---|
| SA448917 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_08132024_SZ_86 | Pool_12C13C | Pellet |
| SA448918 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_08152024_SZ_86 | Pool_12C13C | Pellet |
| SA448919 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_08132024_SZ_42 | Pool_12C13C | Pellet |
| SA448920 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_08152024_SZ_75 | Pool_12C13C | Pellet |
| SA448921 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_08132024_SZ_53 | Pool_12C13C | Pellet |
| SA448922 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_08152024_SZ_64 | Pool_12C13C | Pellet |
| SA448923 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_08132024_SZ_64 | Pool_12C13C | Pellet |
| SA448924 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_08152024_SZ_53 | Pool_12C13C | Pellet |
| SA448925 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_3_08192024_SZ_97 | Pool_12C13C | Pellet |
| SA448926 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_08132024_SZ_75 | Pool_12C13C | Pellet |
| SA448927 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_08152024_SZ_31 | Pool_12C13C | Pellet |
| SA448928 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_08152024_SZ_20 | Pool_12C13C | Pellet |
| SA448929 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_08152024_SZ_97 | Pool_12C13C | Pellet |
| SA448930 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_3_08192024_SZ_86 | Pool_12C13C | Pellet |
| SA448931 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_08132024_SZ_97 | Pool_12C13C | Pellet |
| SA448932 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_1_08152024_SZ_08 | Pool_12C13C | Pellet |
| SA448933 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_3_08212024_SZ_86 | Pool_12C13C | Pellet |
| SA448934 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_3_08192024_SZ_75 | Pool_12C13C | Pellet |
| SA448935 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08192024_SZ_08 | Pool_12C13C | Pellet |
| SA448936 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08192024_SZ_20 | Pool_12C13C | Pellet |
| SA448937 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08192024_SZ_31 | Pool_12C13C | Pellet |
| SA448938 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_2_08192024_SZ_64 | Pool_12C13C | Pellet |
| SA448939 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08192024_SZ_42 | Pool_12C13C | Pellet |
| SA448940 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_2_08192024_SZ_53 | Pool_12C13C | Pellet |
| SA448941 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_08132024_SZ_31 | Pool_12C13C | Pellet |
| SA448942 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_08152024_SZ_42 | Pool_12C13C | Pellet |
| SA448943 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_2_08212024_SZ_53 | Pool_12C13C | Pellet |
| SA448944 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08212024_SZ_42 | Pool_12C13C | Pellet |
| SA448945 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_2_08212024_SZ_64 | Pool_12C13C | Pellet |
| SA448946 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08212024_SZ_20 | Pool_12C13C | Pellet |
| SA448947 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08212024_SZ_31 | Pool_12C13C | Pellet |
| SA448948 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_1_08132024_SZ_08 | Pool_12C13C | Pellet |
| SA448949 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08212024_SZ_08 | Pool_12C13C | Pellet |
| SA448950 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_3_08212024_SZ_97 | Pool_12C13C | Pellet |
| SA448951 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_08132024_SZ_20 | Pool_12C13C | Pellet |
| SA448952 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_3_08212024_SZ_75 | Pool_12C13C | Pellet |
| SA448953 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_1_07312024_SZ_08 | Pool_12C13C | Supernatant |
| SA448954 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_3_08062024_SZ_97 | Pool_12C13C | Supernatant |
| SA448955 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_08032024_SZ_31 | Pool_12C13C | Supernatant |
| SA448956 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_07312024_SZ_64 | Pool_12C13C | Supernatant |
| SA448957 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_07312024_SZ_75 | Pool_12C13C | Supernatant |
| SA448958 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_3_08092024_SZ_97 | Pool_12C13C | Supernatant |
| SA448959 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_08032024_SZ_42 | Pool_12C13C | Supernatant |
| SA448960 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_07312024_SZ_86 | Pool_12C13C | Supernatant |
| SA448961 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_07312024_SZ_20 | Pool_12C13C | Supernatant |
| SA448962 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_08032024_SZ_86 | Pool_12C13C | Supernatant |
| SA448963 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_08032024_SZ_97 | Pool_12C13C | Supernatant |
| SA448964 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_07312024_SZ_31 | Pool_12C13C | Supernatant |
| SA448965 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_3_08092024_SZ_86 | Pool_12C13C | Supernatant |
| SA448966 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_08032024_SZ_53 | Pool_12C13C | Supernatant |
| SA448967 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_08032024_SZ_75 | Pool_12C13C | Supernatant |
| SA448968 | Pool_12C13C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_08032024_SZ_64 | Pool_12C13C | Supernatant |
| SA448969 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_08032024_SZ_20 | Pool_12C13C | Supernatant |
| SA448970 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08092024_SZ_31 | Pool_12C13C | Supernatant |
| SA448971 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_3_08062024_SZ_86 | Pool_12C13C | Supernatant |
| SA448972 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_2_08062024_SZ_64 | Pool_12C13C | Supernatant |
| SA448973 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_2_08092024_SZ_53 | Pool_12C13C | Supernatant |
| SA448974 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_2_08062024_SZ_53 | Pool_12C13C | Supernatant |
| SA448975 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08092024_SZ_08 | Pool_12C13C | Supernatant |
| SA448976 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08062024_SZ_42 | Pool_12C13C | Supernatant |
| SA448977 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08092024_SZ_42 | Pool_12C13C | Supernatant |
| SA448978 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08062024_SZ_20 | Pool_12C13C | Supernatant |
| SA448979 | Pool_12C13C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_07312024_SZ_42 | Pool_12C13C | Supernatant |
| SA448980 | Pool_12C13C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08062024_SZ_08 | Pool_12C13C | Supernatant |
| SA448981 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_2_08092024_SZ_64 | Pool_12C13C | Supernatant |
| SA448982 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_3_08092024_SZ_75 | Pool_12C13C | Supernatant |
| SA448983 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_3_08062024_SZ_75 | Pool_12C13C | Supernatant |
| SA448984 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_1_08032024_SZ_08 | Pool_12C13C | Supernatant |
| SA448985 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_07312024_SZ_97 | Pool_12C13C | Supernatant |
| SA448986 | Pool_12C13C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08092024_SZ_20 | Pool_12C13C | Supernatant |
| SA448987 | Pool_12C13C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08062024_SZ_31 | Pool_12C13C | Supernatant |
| SA448988 | Pool_12C13C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_07312024_SZ_53 | Pool_12C13C | Supernatant |
| SA448989 | Pool_12C_DnCl_Biologicalreplicate_2_analyticalreplicate_3_08212024_SZ_74 | Pool_12C | Pellet |
| SA448990 | Pool_12C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08192024_SZ_19 | Pool_12C | Pellet |
| SA448991 | Pool_12C_DnCl_Biologicalreplicate_2_analyticalreplicate_2_08212024_SZ_63 | Pool_12C | Pellet |
| SA448992 | Pool_12C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08192024_SZ_41 | Pool_12C | Pellet |
| SA448993 | Pool_12C_DnCl_Biologicalreplicate_3_analyticalreplicate_3_08212024_SZ_96 | Pool_12C | Pellet |
| SA448994 | Pool_12C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08192024_SZ_30 | Pool_12C | Pellet |
| SA448995 | Pool_12C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08212024_SZ_07 | Pool_12C | Pellet |
| SA448996 | Pool_12C_DnCl_Biologicalreplicate_3_analyticalreplicate_1_08192024_SZ_07 | Pool_12C | Pellet |
| SA448997 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_08132024_SZ_63 | Pool_12C | Pellet |
| SA448998 | Pool_12C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_08152024_SZ_96 | Pool_12C | Pellet |
| SA448999 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_08132024_SZ_30 | Pool_12C | Pellet |
| SA449000 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_08152024_SZ_85 | Pool_12C | Pellet |
| SA449001 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_08132024_SZ_41 | Pool_12C | Pellet |
| SA449002 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_08132024_SZ_19 | Pool_12C | Pellet |
| SA449003 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_08152024_SZ_74 | Pool_12C | Pellet |
| SA449004 | Pool_12C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_08132024_SZ_52 | Pool_12C | Pellet |
| SA449005 | Pool_12C_DnCl_Biologicalreplicate_1_analyticalreplicate_1_08212024_SZ_19 | Pool_12C | Pellet |
| SA449006 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_2_08152024_SZ_63 | Pool_12C | Pellet |
| SA449007 | Pool_12C_DnHz_Biologicalreplicate_3_analyticalreplicate_2_08152024_SZ_52 | Pool_12C | Pellet |
| SA449008 | Pool_12C_DnCl_Biologicalreplicate_3_analyticalreplicate_2_08212024_SZ_52 | Pool_12C | Pellet |
| SA449009 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_2_08152024_SZ_41 | Pool_12C | Pellet |
| SA449010 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_3_08132024_SZ_74 | Pool_12C | Pellet |
| SA449011 | Pool_12C_DnCl_Biologicalreplicate_2_analyticalreplicate_1_08212024_SZ_30 | Pool_12C | Pellet |
| SA449012 | Pool_12C_DnHz_Biologicalreplicate_2_analyticalreplicate_1_08152024_SZ_30 | Pool_12C | Pellet |
| SA449013 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_3_08132024_SZ_85 | Pool_12C | Pellet |
| SA449014 | Pool_12C_DnHz_Biologicalreplicate_1_analyticalreplicate_1_08152024_SZ_19 | Pool_12C | Pellet |
| SA449015 | Pool_12C_DnHz_Biologicalreplicate_3_analyticalreplicate_3_08132024_SZ_96 | Pool_12C | Pellet |
| SA449016 | Pool_12C_DnCl_Biologicalreplicate_1_analyticalreplicate_2_08212024_SZ_41 | Pool_12C | Pellet |
Collection:
| Collection ID: | CO004069 |
| Collection Summary: | For the media collection, 500 µL of media was directly aspirated into 1.5 mL Eppendorf tube from each well and flash frozen with liquid nitrogen, stored immediately at -80°C. |
| Sample Type: | iPSC cells |
Treatment:
| Treatment ID: | TR004085 |
| Treatment Summary: | KOLF2.2J cells were passaged as single cells with Accutase and seeded onto SynthemaxII coated 12-well plates at 10k cells per well. 24 h after cell passage, StemFlex media was changed to trophectoderm induction media (TE media). Basal TE media consists of DMEM/F12, supplemented with 20% KnockOut Serum (ThermoFisher, #10828028), 2 mM L-Glutamine (Gibco™, #25030081), 1x MEM non-essential amnio acid (GibcoTM, #11140050), 0.1 mM β-Mercaptoethanol (Sigma, #3148). In addition, 100 ng/ml BMP4 (R&D, #314-BP- 050/CF), and 20 μM SU5402 (Millipore Sigma, # 57263) were added at day 0 and onwards to induce trophoblast lineage (BS condition). For the induction of primitive syncytium, 1 mM A-83 (TOCRIS, #2939) was added at the end of Day 2. Media was refreshed every 2 days until the end of differentiation (Day 6). On day 6, TE media was replaced by the StemFlex media with or without addition of nutrients 24 hours prior to collection. |
Sample Preparation:
| Sampleprep ID: | SP004082 |
| Sampleprep Summary: | See from protocol file. |
| Sampleprep Protocol Filename: | DnCl_Protocol_one_phase_extraction_SZ_05132025.pdf DnHz_Protocol_one_phase_extraction_SZ_05132025.pdf OnePhaseSupernatant_Protocol_SZ_05132025.pdf OnePhaseCellPellet_Protocol_SZ_05132025.pdf |
Chromatography:
| Chromatography ID: | CH004915 |
| Chromatography Summary: | See protocol file |
| Methods Filename: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Instrument Name: | Thermo Vanquish Duo UHPLC |
| Column Name: | Thermo Accucore HILIC (100 x 2.1 mm, 2.6 µm) |
| Column Temperature: | 45°C |
| Flow Gradient: | 0.0min: 100%A, 0.2min: 2% A, 8.75min: 2%A, 10min: 100%A, 15min: 100%A, 17min: 100%A |
| Flow Rate: | 0.55 mL/min |
| Solvent A: | 95% acetonitrile/5% water; 10mM ammonium acetate; 0.1% acetic acid |
| Solvent B: | 50% acetonitrile/50% water; 10mM ammonium acetate; 0.1% acetic acid |
| Chromatography Type: | HILIC |
| Chromatography ID: | CH004916 |
| Chromatography Summary: | See protocol file |
| Methods Filename: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Instrument Name: | Thermo Vanquish |
| Column Name: | Thermo Hypersil GOLD RP C18 (50 x 2.1 mm, 3 µm) |
| Column Temperature: | 45°C |
| Flow Gradient: | 0.0min: 85%A, 0.01min: 70%A, 2.01min: 52%A, 2.51min: 18%A, 11.0min: 1%A, 11.5min: 1%A, 12.0min: 1%A, 15.0min: 0%A, 16.5min: 85%A, 17.5min: 85%A |
| Flow Rate: | 0.4 mL/min |
| Solvent A: | 100% water; 0.1% formic acid |
| Solvent B: | 100% acetonitrile; 0.1% formic acid |
| Chromatography Type: | Reversed phase |
| Chromatography ID: | CH004917 |
| Chromatography Summary: | See protocol file |
| Methods Filename: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Instrument Name: | Thermo Vanquish |
| Column Name: | Waters ACQUITY UPLC CSH C18 (100 x 2.1 mm, 1.7 µm) |
| Column Temperature: | 45°C |
| Flow Gradient: | 0.0min: 100%B, 3.0min: 100%B, 16.0min: 65%B, 18.0min: 100%B, 21.0min: 100%B, 21.5min: 0%B, 26.0min: 0%B. |
| Flow Rate: | 0.4 mL/min |
| Solvent A: | 95% water/5% acetonitrile; 0.1% Formic acid |
| Solvent B: | 100% acetonitrile; 0.1% Formic acid (v/v) |
| Chromatography Type: | Reversed phase |
| Chromatography ID: | CH004918 |
| Chromatography Summary: | See protocol file |
| Methods Filename: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Instrument Name: | Thermo Vanquish |
| Column Name: | Waters ACQUITY UPLC CSH C18 (100 x 2.1 mm, 1.7 µm) |
| Column Temperature: | 45°C |
| Flow Gradient: | 0.0min: 100%B, 3.0min: 100%B, 16.0min: 65%B, 18.0min: 100%B, 21.0min: 100%B, 21.5min: 0%B, 26.0min: 0%B. |
| Flow Rate: | 0.4 mL/min |
| Solvent A: | 95% water/5% acetonitrile; 0.1% Formic acid |
| Solvent B: | 100% acetonitrile; 0.1% Formic acid (v/v) |
| Chromatography Type: | Reversed phase |
Analysis:
| Analysis ID: | AN006469 |
| Analysis Type: | MS |
| Analysis Protocol File: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004915 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006469_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006470 |
| Analysis Type: | MS |
| Analysis Protocol File: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004915 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006470_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006471 |
| Analysis Type: | MS |
| Analysis Protocol File: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004916 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006471_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006472 |
| Analysis Type: | MS |
| Analysis Protocol File: | Regular_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004916 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006472_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006473 |
| Analysis Type: | MS |
| Analysis Protocol File: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004917 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006473_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006474 |
| Analysis Type: | MS |
| Analysis Protocol File: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004917 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006474_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006475 |
| Analysis Type: | MS |
| Analysis Protocol File: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004918 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006475_Results.txt |
| Units: | peak intensity |
| Analysis ID: | AN006476 |
| Analysis Type: | MS |
| Analysis Protocol File: | DnCl_DnHZ_LC_MS_Protocol_SZ_05132025.pdf |
| Chromatography ID: | CH004918 |
| Has Mz: | 1 |
| Has Rt: | 1 |
| Rt Units: | Seconds |
| Results File: | ST003940_AN006476_Results.txt |
| Units: | peak intensity |