Metabolomics Structure Database

 
MW REGNO: 70509
Common Name:Narbomycin
Systematic Name:(3R,5R,6S,7S,9R,11E,13R,14R)-6-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyl-tetrahydropyran-2-yl]oxy-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione
RefMet Name:Narbomycin
Synonyms:AC1NQZE9; SureCN691770; CHEMBL106096; C11998 [PubChem Synonyms]
Exact Mass:
509.3353 (neutral)    Calculate m/z:
Formula:C28H47NO7
InChIKey:OXFYAOOMMKGGAI-JLTOUBQASA-N
ClassyFire superclass:Organic oxygen compounds [C0004603]
ClassyFire class:Organooxygen compounds [C0000323]
ClassyFire subclass:Carbohydrates and carbohydrate conjugates [C0000011]
ClassyFire direct parent:Aminoglycosides [C0000282]
NP-MRD NMR spectra:View NMR spectra
SMILES:CC[C@@H]1OC(=O)[C@@H](C)C(=O)[C@@H](C)[C@H](O[C@H]2O[C@@H](C)C[C@H]([C@@H]2O)N(C)C)[C@H](C)C[C@H](C)C(=O)C=C[C@@H]1C
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:5282036
CHEBI ID:29649
KEGG ID:C11998
Natural Products Atlas ID:NP016932
NP-MRD ID(NMR):NP0021627
Plant Metabolite Hub(Pmhub):MS000022764

Calculated physicochemical properties (?):

Heavy Atoms: 36  
Rings: 2  
Aromatic Rings: 0  
Rotatable Bonds: 4  
van der Waals Molecular volume: 530.21 Å3 molecule-1  
Toplogical Polar Sufrace Area: 106.51 Å2 molecule-1  
Hydrogen Bond Donors: 1  
Hydrogen Bond Acceptors: 8  
logP: 5.12  
Molar Refractivity: 140.14  
Fraction sp3 Carbons: 0.82  
sp3 Carbons: 23  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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