Metabolomics Structure Database

MDLMOL SDF CSV TSV

MW REGNO:	70678
Common Name:	Lycodine
Systematic Name:	(2R,3R,4R,5S)-2-[(1R)-1-[(2R,3R,4R,5R)-5-[2-[(4aR,6R)-6-[(2R,3R,4R,5R)-5-[(1R)-1-[(2R,3R,4R,5S)-5-[(1R)-1,2-dihydroxyethyl]-3,4-dihydroxy-tetrahydrofuran-2-yl]oxy-2-hydroxy-ethyl]-3,4-dihydroxy-tetrahydrofuran-2-yl]oxy-4a,8-dimethyl-2,3,4,5,6,7-hexahydro-1H-naphthalen-2-yl]allyloxy]-3,4-dihydroxy-tetrahydrofuran-2-yl]-2-hydroxy-ethoxy]-5-[(1R)-1,2-dihydroxyethyl]tetrahydrofuran-3,4-diol
RefMet Name:	Lycodine
Synonyms:	C09876; SureCN12487986 [PubChem Synonyms]
Exact Mass:	242.1783 (neutral)    Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M-H+2K]+ [M+Na]+ [M+2Na]2+ [M-H+2Na]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M-H]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+HCOO]- M(neutral)
Formula:	C16H22N2
InChIKey:	JJPMUZRSJKMFRK-OQMKEHIESA-N
ClassyFire superclass:	Organoheterocyclic compounds
ClassyFire class:	Phenanthrolines
ClassyFire subclass:	Phenanthrolines
ClassyFire direct parent:	Aromatic heteropolycyclic compounds
SMILES:	C[C@@H]1C[C@H]2Cc3c(cccn3)[C@@]3(C1)[C@@H]2CCCN3
Studies:	Available studies (via RefMet name)

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All Database Links Calculated Properties Human Pathways

External database links:

PubChem CID:	5462443
CHEBI ID:	6591
HMDB ID:	HMDB0254255
KEGG ID:	C09876
Plant Metabolite Hub(Pmhub):	MS000021100

Calculated physicochemical properties (?):

Heavy Atoms:	18
Rings:	4
Aromatic Rings:	1
Rotatable Bonds:	0
van der Waals Molecular volume:	239.10 Å3 molecule-1
Toplogical Polar Sufrace Area:	24.92 Å2 molecule-1
Hydrogen Bond Donors:	1
Hydrogen Bond Acceptors:	1
logP:	3.16
Molar Refractivity:	72.72
Fraction sp3 Carbons:	0.69
sp3 Carbons:	11

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y
NPClassifier classification: "NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products", Kim HW, Wang M, Leber CA, Nothias LF, Reher R, Kang KB, van der Hooft JJJ, Dorrestein PC, Gerwick WH and Cottrell GW. J Nat Prod. 2021 Nov 26;84(11):2795-2807.DOI: 10.1021/acs.jnatprod.1c00399.