Metabolomics Structure Database

 
MW REGNO: 49352
Common Name:Gymnodimine
Systematic Name:5-{19-hydroxy-2,15,18,24-tetramethyl-25-oxa-7-azatetracyclo[20.2.1.0^{6,11}.0^{11,16}]pentacosa-2,6,14,17-tetraen-14-yl}-3-methyl-2,5-dihydrofuran-2-one
RefMet Name:Gymnodimine
Synonyms: [PubChem Synonyms]
Exact Mass:
507.3349 (neutral)    Calculate m/z:
Formula:C32H45NO4
InChIKey:DVXZVCNEGRKLMW-DCJZOFSYSA-N
ClassyFire superclass:Organoheterocyclic compounds [C0000002]
ClassyFire class:Pyridines and derivatives [C0000089]
ClassyFire subclass:Hydropyridines [C0002224]
ClassyFire direct parent:Tetrahydropyridines [C0001934]
SMILES:CC1CC2CCC(O)C(C)=CC3C(C)=C(CCC43CCCN=C4CCC=C(C)C1O2)C1C=C(C)C(=O)O1
Studies:Available studies (via RefMet name)

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Calculated physicochemical properties (?):

Heavy Atoms: 37  
Rings: 5  
Aromatic Rings: 0  
Rotatable Bonds: 1  
van der Waals Molecular volume: 530.68 Å3 molecule-1  
Toplogical Polar Sufrace Area: 72.26 Å2 molecule-1  
Hydrogen Bond Donors: 1  
Hydrogen Bond Acceptors: 5  
logP: 7.86  
Molar Refractivity: 150.00  
Fraction sp3 Carbons: 0.69  
sp3 Carbons: 22  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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