Metabolomics Structure Database

MDLMOL SDF CSV TSV

MW REGNO:	51227
Common Name:	UDP-D-galactose
Systematic Name:	uridine 5'-[3-(D-galactopyranosyl) dihydrogen diphosphate]
RefMet Name:	UDP-galactose
Synonyms:	Udp galactose; Udpgal; Uridine 5'-(trihydrogen diphosphate), P'-alpha-D-galactopyranosyl ester; Uridine diphosphate galactose; Uridine diphosphogalactose; Uridine pyrophosphogalactose; Uridinediphosphogalactose [PubChem Synonyms]
Exact Mass:	566.0550 (neutral)    Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M-H+2K]+ [M+Na]+ [M+2Na]2+ [M-H+2Na]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M-H]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+HCOO]- M(neutral)
Formula:	C15H24N2O17P2
InChIKey:	HSCJRCZFDFQWRP-LNYDKVEPSA-N
ClassyFire superclass:	Nucleosides, nucleotides, and analogues
ClassyFire class:	Pyrimidine nucleotides
ClassyFire subclass:	Pyrimidine nucleotide sugars
ClassyFire direct parent:	Pyrimidine nucleotide sugars
SMILES:	c1cn([C@H]2[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC3[C@@H]([C@H]([C@H]([C@@H](CO)O3)O)O)O)O2)O)O)c(=O)[nH]c1=O
Studies:	Available studies (via RefMet name)

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All Database Links Calculated Properties Human Pathways

Calculated physicochemical properties (?):

Heavy Atoms:	36
Rings:	3
Aromatic Rings:	1
Rotatable Bonds:	9
van der Waals Molecular volume:	423.25 Å3 molecule-1
Toplogical Polar Sufrace Area:	301.13 Å2 molecule-1
Hydrogen Bond Donors:	9
Hydrogen Bond Acceptors:	18
logP:	0.05
Molar Refractivity:	113.74
Fraction sp3 Carbons:	0.73
sp3 Carbons:	11

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y
NPClassifier classification: "NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products", Kim HW, Wang M, Leber CA, Nothias LF, Reher R, Kang KB, van der Hooft JJJ, Dorrestein PC, Gerwick WH and Cottrell GW. J Nat Prod. 2021 Nov 26;84(11):2795-2807.DOI: 10.1021/acs.jnatprod.1c00399.