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ST001031 Metabolome analysis on multi-connected biparental chromosome segment substitution line populations in riceList of human metabolic pathways and metabolites (REACTOME)
Pathway name (# of metabolites detected in study)
Reactome pathway
Abacavir metabolism (4)
REACT_121388
Abnormal metabolism in phenylketonuria (5)
REACT_121117
Acetylcholine Neurotransmitter Release Cycle (1)
REACT_15309
Activation of AMPA receptors (1)
REACT_18338
Activation of Ca-permeable Kainate Receptor (1)
REACT_21346
Activation of gene expression by SREBF (SREBP) (1)
REACT_147904
Activation of Na-permeable Kainate Receptors (1)
REACT_21343
Activation of the phototransduction cascade (2)
REACT_163932
Adenosine P1 receptors (1)
REACT_18288
Adenylate cyclase activating pathway (1)
REACT_15312
Aflatoxin activation and detoxification (1)
REACT_228214
Agmatine biosynthesis (2)
REACT_14800
alpha-linolenic acid (ALA) metabolism (1)
REACT_121147
Alpha-oxidation of phytanate (1)
REACT_17003
Amino acid synthesis and interconversion (transamination) (5)
REACT_238
Amino acid transport across the plasma membrane (16)
REACT_13796
Androgen biosynthesis (1)
REACT_11059
Antigen Presentation: Folding, assembly and peptide loading of class I MHC (17)
REACT_75795
Antigen processing: Ubiquitination & Proteasome degradation (17)
REACT_75842
Astrocytic Glutamate-Glutamine Uptake And Metabolism (1)
REACT_13639
Beta oxidation of butanoyl-CoA to acetyl-CoA (1)
REACT_419
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA (1)
REACT_1708
Beta oxidation of hexanoyl-CoA to butanoyl-CoA (1)
REACT_1887
Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA (1)
REACT_735
Beta oxidation of myristoyl-CoA to lauroyl-CoA (1)
REACT_2108
Beta oxidation of octanoyl-CoA to hexanoyl-CoA (1)
REACT_1697
Beta oxidation of palmitoyl-CoA to myristoyl-CoA (1)
REACT_2025
Beta-oxidation of pristanoyl-CoA (1)
REACT_17017
Beta-oxidation of very long chain fatty acids (1)
REACT_17062
Biogenic amines are oxidatively deaminated to aldehydes by MAOA and MAOB (2)
REACT_416
Biotin transport and metabolism (1)
REACT_11153
BMAL1:CLOCK,NPAS2 activates circadian gene expression (1)
REACT_111118
Branched-chain amino acid catabolism (5)
REACT_197
Ca2+ pathway (2)
REACT_172761
Cam-PDE 1 activation (1)
REACT_15408
Carnitine synthesis (1)
REACT_2125
Catecholamine biosynthesis (1)
REACT_15551
Cell redox homeostasis (1)
REACT_121394
cGMP effects (2)
REACT_23767
Cholesterol biosynthesis (1)
REACT_9405
Circadian Clock (1)
REACT_24941
Citric acid cycle (TCA cycle) (1)
REACT_1785
Class C/3 (Metabotropic glutamate/pheromone receptors) (4)
REACT_18319
Cobalamin (Cbl, vitamin B12) transport and metabolism (2)
REACT_163862
Coenzyme A biosynthesis (1)
REACT_11218
Conjugation of salicylate with glycine (1)
REACT_6812
Creatine metabolism (1)
REACT_813
CREB phosphorylation through the activation of Adenylate Cyclase (1)
REACT_20625
CREB phosphorylation through the activation of CaMKII (1)
REACT_20642
Cross-presentation of soluble exogenous antigens (endosomes) (17)
REACT_111056
Cysteine formation from homocysteine (2)
REACT_115589
Cytosolic tRNA aminoacylation (17)
REACT_15306
DARPP-32 events (1)
REACT_15334
degradation of AXIN (1)
REACT_200766
Degradation of cysteine and homocysteine (3)
REACT_115654
Degradation of GABA (2)
REACT_23964
Digestion of dietary lipid (1)
REACT_9518
Downregulation of SMAD2/3:SMAD4 transcriptional activity (1)
REACT_121111
Endosomal/Vacuolar pathway (17)
REACT_111168
eNOS activation (1)
REACT_12477
EPHB-mediated forward signaling (1)
REACT_228085
ER-Phagosome pathway (17)
REACT_111178
Ethanol oxidation (1)
REACT_34
Formation of the active cofactor, UDP-glucuronate (1)
REACT_6737
GABA synthesis (1)
REACT_24020
Galactose catabolism (1)
REACT_532
G alpha (i) signalling events (5)
REACT_19231
G alpha (q) signalling events (4)
REACT_18283
G alpha (s) signalling events (3)
REACT_19327
G alpha (z) signalling events (1)
REACT_19333
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion (1)
REACT_18274
Glucocorticoid biosynthesis (1)
REACT_11036
Gluconeogenesis (3)
REACT_1520
Glutamate Neurotransmitter Release Cycle (1)
REACT_12591
Glutathione synthesis and recycling (17)
REACT_6960
Glycolysis (2)
REACT_1383
Glycosphingolipid metabolism (1)
REACT_116105
Glyoxylate metabolism (1)
REACT_16925
HCN channels (1)
REACT_75862
Hedgehog 'off' state (1)
REACT_267634
Histidine catabolism (3)
REACT_1249
HS-GAG degradation (1)
REACT_120752
Hydrolysis of LPC (1)
REACT_120977
Hypusine synthesis from eIF5A-lysine (2)
REACT_12469
Inactivation, recovery and regulation of the phototransduction cascade (2)
REACT_163919
Interconversion of polyamines (2)
REACT_14805
Ligand-gated ion channel transport (1)
REACT_25387
Linoleic acid (LA) metabolism (2)
REACT_121100
Lysine catabolism (4)
REACT_1298
Metabolism of folate and pterines (2)
REACT_11167
Metabolism of nucleotides (2)
REACT_1698
Metabolism of polyamines (3)
REACT_14820
Metabolism of serotonin (2)
REACT_15532
Methionine salvage pathway (3)
REACT_75881
Methylation (3)
REACT_6946
Mineralocorticoid biosynthesis (1)
REACT_11047
mitochondrial fatty acid beta-oxidation of unsaturated fatty acids (1)
REACT_160
Mitochondrial iron-sulfur cluster biogenesis (2)
REACT_150353
Mitochondrial tRNA aminoacylation (17)
REACT_15302
Molybdenum cofactor biosynthesis (3)
REACT_25073
mRNA Capping (1)
REACT_1470
mRNA decay by 3' to 5' exoribonuclease (1)
REACT_20619
mRNA decay by 5' to 3' exoribonuclease (1)
REACT_20518
Na+/Cl- dependent neurotransmitter transporters (16)
REACT_20506
Neurotransmitter Clearance In The Synaptic Cleft (1)
REACT_13583
NGF-independant TRKA activation (1)
REACT_11046
Nicotinate metabolism (2)
REACT_11088
Nitric oxide stimulates guanylate cyclase (2)
REACT_23862
Organic anion transporters (1)
REACT_19372
Organic cation transport (5)
REACT_22357
Orphan transporters (1)
REACT_267716
PAOs oxidise polyamines to amines (2)
REACT_505
PDE3B signalling (1)
REACT_1451
Phagosomal maturation (early endosomal stage) (1)
REACT_121256
Phenylalanine and tyrosine catabolism (5)
REACT_1786
Phosphate bond hydrolysis by NUDT proteins (1)
REACT_150237
PKA activation (1)
REACT_15530
PKA activation in glucagon signalling (1)
REACT_1946
Platelet degranulation (1)
REACT_318
PPARA activates gene expression (1)
REACT_116145
Presynaptic function of Kainate receptors (1)
REACT_21254
Proline catabolism (3)
REACT_1002
Proton-coupled neutral amino acid transporters (2)
REACT_19348
Proton/oligonucleotide cotransporters (17)
REACT_19328
Purine catabolism (6)
REACT_2086
Purine ribonucleoside monophosphate biosynthesis (5)
REACT_1776
Purine salvage (7)
REACT_1923
Pyrimidine biosynthesis (3)
REACT_21376
Pyrimidine catabolism (3)
REACT_1023
Pyrimidine salvage reactions (2)
REACT_655
Pyruvate metabolism (1)
REACT_2071
Rap1 signalling (1)
REACT_23898
Ras activation uopn Ca2+ infux through NMDA receptor (1)
REACT_20546
Regulation of HSF1-mediated heat shock response (1)
REACT_200780
Regulation of insulin secretion (1)
REACT_18325
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) (1)
REACT_19241
Removal of the Flap Intermediate (1)
REACT_70
Removal of the Flap Intermediate from the C-strand (1)
REACT_7999
Respiratory electron transport (1)
REACT_22393
Retinoid cycle disease events (2)
REACT_160130
Retinoid metabolism and transport (2)
REACT_24968
REV-ERBA represses gene expression (1)
REACT_118789
Role of phospholipids in phagocytosis (1)
REACT_160158
RORA activates circadian gene expression (1)
REACT_118659
Scavenging by Class A Receptors (2)
REACT_163699
Serine biosynthesis (3)
REACT_115789
Serotonin and melatonin biosynthesis (2)
REACT_15439
Serotonin clearance from the synaptic cleft (1)
REACT_15391
Serotonin Neurotransmitter Release Cycle (1)
REACT_15425
Serotonin receptors (1)
REACT_17064
SIRT1 negatively regulates rRNA Expression (1)
REACT_200827
Sphingolipid de novo biosynthesis (2)
REACT_115810
Sulfur amino acid metabolism (5)
REACT_115639
Synthesis and interconversion of nucleotide di- and triphosphates (4)
REACT_21330
Synthesis of 15-eicosatetraenoic acid derivatives (1)
REACT_150422
Synthesis of bile acids and bile salts via 24-hydroxycholesterol (1)
REACT_11053
Synthesis of bile acids and bile salts via 27-hydroxycholesterol (1)
REACT_11048
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol (1)
REACT_11041
Synthesis of Dolichyl-phosphate (1)
REACT_22230
Synthesis of IP2, IP, and Ins in the cytosol (1)
REACT_150352
Synthesis of Ketone Bodies (1)
REACT_1464
Synthesis of Leukotrienes (LT) and Eoxins (EX) (1)
REACT_150420
Synthesis of Lipoxins (LX) (1)
REACT_150320
Synthesis of PA (2)
REACT_120906
Synthesis of PC (1)
REACT_121238
Synthesis of PG (1)
REACT_121280
Synthesis of Prostaglandins (PG) and Thromboxanes (TX) (1)
REACT_150149
Synthesis of PS (2)
REACT_120823
Synthesis of UDP-N-acetyl-glucosamine (1)
REACT_22394
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation (1)
REACT_111176
The activation of arylsulfatases (1)
REACT_121036
The canonical retinoid cycle in rods (twilight vision) (3)
REACT_160156
The retinoid cycle in cones (daylight vision) (1)
REACT_160083
Thyroxine biosynthesis (2)
REACT_15292
Tolerance by Mtb to nitric oxide produced by macrophages (1)
REACT_120983
Transcriptional activation of mitochondrial biogenesis (1)
REACT_200608
Transcriptional regulation of white adipocyte differentiation (1)
REACT_27161
Transport of fatty acids (1)
REACT_23892
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds (1)
REACT_19305
Transport of inorganic cations/anions and amino acids/oligopeptides (2)
REACT_19397
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane (7)
REACT_1206
Transport of nucleotide sugars (1)
REACT_22151
Triglyceride Biosynthesis (1)
REACT_1190
Tryptophan catabolism (6)
REACT_916
Unblocking of NMDA receptor, glutamate binding and activation (1)
REACT_20594
Uptake and function of anthrax toxins (1)
REACT_228255
Urea cycle (4)
REACT_847
Utilization of Ketone Bodies (1)
REACT_59
Vasopressin regulates renal water homeostasis via Aquaporins (1)
REACT_24023
VEGFR2 mediated vascular permeability (1)
REACT_228016
Vitamin B1 (thiamin) metabolism (1)
REACT_11117
Vitamin B2 (riboflavin) metabolism (1)
REACT_11070
Vitamin C (ascorbate) metabolism (1)
REACT_11202
Vitamins B6 activation to pyridoxal phosphate (2)
REACT_25012
Xenobiotics (1)
REACT_13543
YAP1- and WWTR1 (TAZ)-stimulated gene expression (1)
REACT_118713
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