ST001956 Timecourse exometabolome analysis of glucose grown Rubrivivax benzoatilyticus cells
List of human metabolic pathways and metabolites (REACTOME)

Pathway name (# of metabolites detected in study)Reactome pathway
Abnormal metabolism in phenylketonuria (3) REACT_121117
Activation of gene expression by SREBF (SREBP) (1) REACT_147904
Agmatine biosynthesis (1) REACT_14800
Amino acid synthesis and interconversion (transamination) (2) REACT_238
Amino acid transport across the plasma membrane (5) REACT_13796
Antigen Presentation: Folding, assembly and peptide loading of class I MHC (5) REACT_75795
Antigen processing: Ubiquitination & Proteasome degradation (5) REACT_75842
BMAL1:CLOCK,NPAS2 activates circadian gene expression (1) REACT_111118
Branched-chain amino acid catabolism (3) REACT_197
Circadian Clock (1) REACT_24941
Class A/1 (Rhodopsin-like receptors) (1) REACT_14828
Conjugation of benzoate with glycine (1) REACT_6933
Cross-presentation of soluble exogenous antigens (endosomes) (5) REACT_111056
CYP2E1 reactions (1) REACT_13797
Cytosolic tRNA aminoacylation (5) REACT_15306
Digestion of dietary carbohydrate (2) REACT_9472
Digestion of dietary lipid (1) REACT_9518
Endosomal/Vacuolar pathway (5) REACT_111168
eNOS activation (1) REACT_12477
ER-Phagosome pathway (5) REACT_111178
ER Quality Control Compartment (ERQC) (1) REACT_25091
Ethanol oxidation (1) REACT_34
Fatty acids (1) REACT_13814
Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion (2) REACT_19193
Fatty Acyl-CoA Biosynthesis (1) REACT_1319
Free fatty acid receptors (3) REACT_21268
G alpha (i) signalling events (2) REACT_19231
G alpha (q) signalling events (2) REACT_18283
Gluconeogenesis (1) REACT_1520
Glutathione synthesis and recycling (5) REACT_6960
Glycolysis (1) REACT_1383
Glyoxylate metabolism (3) REACT_16925
Hydroxycarboxylic acid-binding receptors (2) REACT_163785
Mitochondrial iron-sulfur cluster biogenesis (1) REACT_150353
Mitochondrial tRNA aminoacylation (5) REACT_15302
Molybdenum cofactor biosynthesis (1) REACT_25073
Na+/Cl- dependent neurotransmitter transporters (5) REACT_20506
Na+-dependent glucose transporters (1) REACT_19165
Nicotinamide salvaging (1) REACT_11213
Organic anion transport (1) REACT_22310
Organic anion transporters (2) REACT_19372
Orphan transporters (1) REACT_267716
Passive transport by Aquaporins (1) REACT_23826
Phenylalanine and tyrosine catabolism (3) REACT_1786
Plasmalogen biosynthesis (1) REACT_1407
PPARA activates gene expression (1) REACT_116145
Progressive trimming of alpha-1,2-linked mannose residues from Man9/8/7GlcNAc2 to produce Man5GlcNAc2 (1) REACT_25396
Proton-coupled monocarboxylate transport (2) REACT_20515
Proton-coupled neutral amino acid transporters (1) REACT_19348
Proton/oligonucleotide cotransporters (5) REACT_19328
Pyrimidine catabolism (2) REACT_1023
Pyruvate metabolism (2) REACT_2071
Reactions specific to the complex N-glycan synthesis pathway (1) REACT_25302
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) (1) REACT_19241
Regulation of pyruvate dehydrogenase (PDH) complex (1) REACT_12528
Retinoid cycle disease events (1) REACT_160130
Retinoid metabolism and transport (1) REACT_24968
REV-ERBA represses gene expression (1) REACT_118789
RORA activates circadian gene expression (1) REACT_118659
Scavenging by Class A Receptors (1) REACT_163699
Sialic acid metabolism (1) REACT_200874
Synthesis of very long-chain fatty acyl-CoAs (1) REACT_380
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1) (3) REACT_24019
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) (2) REACT_23824
Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation (1) REACT_111176
The canonical retinoid cycle in rods (twilight vision) (1) REACT_160156
The retinoid cycle in cones (daylight vision) (1) REACT_160083
Thyroxine biosynthesis (1) REACT_15292
Transcriptional activation of mitochondrial biogenesis (1) REACT_200608
Transcriptional regulation of white adipocyte differentiation (1) REACT_27161
Transport of fatty acids (4) REACT_23892
Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds (1) REACT_19305
Tryptophan catabolism (3) REACT_916
Ubiquinol biosynthesis (1) REACT_160111
Urea cycle (1) REACT_847
YAP1- and WWTR1 (TAZ)-stimulated gene expression (1) REACT_118713
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