Metabolomics Workbench : NIH Data Repository : Analyze Studies

Data for ST003728

(Analysis AN006115): Average values per metabolite and experimental factor (Units:Mass Response Ratio)

Metabolite structure	F1	F2
1,2^-O-dimethyladenosine	0.00	0.00
1-methyladenosine	0.05	0.05
1-methylguanosine	0.01	0.01
1-methylinosine	0.00	0.00
1-methylpseudouridine_1	0.00	0.00
1-methylpseudouridine_2	0.00	0.00
2,8-dimethyladenosine	0.00	0.00
2-methyladenosine	0.00	0.00
2-methylthio-N6-isopentenyladenosine_1	0.00	0.00
2-methylthio-N6-isopentenyladenosine_2	0.00	0.00
2-methylthio-N6-methyladenosine	0.00	0.00
2^-O-methyladenosine	0.01	0.01
2^-O-methylcytidine	0.04	0.04
2^-O-methylguanosine	0.02	0.02
2^-O-methylinosine_1	0.00	0.00
2^-O-methylinosine_2	0.00	0.00
2^-O-methyluridine	0.03	0.03
2-thio-2^-O-methyluridine	0.00	0.00
2-thiocytidine	0.00	0.00
2-thiouridine	0.00	0.00
3,2^-O-dimethyluridine	0.00	0.00
3-(3-amino-3-carboxypropyl)uridine	0.00	0.00
3-methylcytidine	0.00	0.00
3-methylpseudouridine_1	0.00	0.00
3-methylpseudouridine_2	0.00	0.00
3-methyluridine	0.01	0.01
4-demethylwyosine	0.00	0.00
4-thiouridine	0.00	0.00
5,2^-O-dimethylcytidine	0.00	0.00
5,2^-O-dimethyluridine	0.00	0.00
5-carbamoylmethyluridine_1	0.00	0.00
5-carbamoylmethyluridine_2	0.00	0.00
5-carboxycytidine	0.00	0.00
5-carboxymethylaminomethyluridine_1	0.01	0.01
5-carboxymethylaminomethyluridine_2	0.00	0.00
5-carboxymethylaminomethyluridine_3	0.01	0.00
5-carboxymethyluridine_1	0.00	0.00
5-carboxymethyluridine_2	0.00	0.00
5-formylcytidine	0.00	0.00
5-hydroxymethylcytidine	0.00	0.00
5-hydroxyuridine	0.00	0.00
5-methoxycarbonylmethyl-2^-O-methyluridine	0.00	0.00
5-methoxycarbonylmethyl-2-thiouridine_1	0.00	0.01
5-methoxycarbonylmethyl-2-thiouridine_2	0.00	0.00
5-methoxycarbonylmethyluridine_1	0.00	0.00
5-methoxycarbonylmethyluridine_2	0.00	0.00
5-methoxyuridine	0.00	0.00
5-methyl-2-thiouridine	0.01	0.01
5-methylaminomethyl-2-thiouridine_1	0.00	0.00
5-methylaminomethyl-2-thiouridine_2	0.00	0.00
5-methylcytidine	0.03	0.03
5-methyldihydrouridine	0.00	0.00
5-methyluridine	0.00	0.00
7-methylguanosine	0.00	0.01
8-methyladenosine	0.00	0.00
adenosine	1.00	1.00
cytidine	1.00	1.00
dihydrouridine	0.01	0.00
guanosine	1.00	1.00
inosine	0.00	0.00
isowyosine	0.00	0.00
N2,2^-O-dimethylguanosine	0.00	0.00
N2,7-dimethylguanosine	0.02	0.02
N2-methylguanosine	0.00	0.00
N2,N2,7-trimethylguanosine	0.00	0.00
N2,N2-dimethylguanosine	0.01	0.01
N4,2^-O-dimethylcytidine	0.00	0.00
N4-acetyl-2^-O-methylcytidine_1	0.00	0.00
N4-acetyl-2^-O-methylcytidine_2	0.00	0.00
N4-acetylcytidine_1	0.05	0.05
N4-acetylcytidine_2	0.04	0.04
N4-methylcytidine_1	0.03	0.03
N4-methylcytidine_2	0.00	0.00
N4,N4,2^-O-trimethylcytidine	0.00	0.00
N4,N4-dimethylcytidine	0.00	0.00
N6,2^-O-dimethyladenosine	0.00	0.00
N6-acetyladenosine_1	0.00	0.00
N6-acetyladenosine_2	0.00	0.00
N6-(cis-hydroxyisopentenyl)adenosine	0.00	0.00
N6-formyladenosine_1	0.00	0.00
N6-formyladenosine_2	0.00	0.00
N6-hydroxymethyladenosine_1	0.00	0.00
N6-hydroxymethyladenosine_2	0.00	0.00
N6-isopentenyladenosine_1	0.00	0.00
N6-isopentenyladenosine_2	0.00	0.00
N6-methyladenosine	0.00	0.00
N6-methyl-N6-threonylcarbamoyladenosine_1	0.00	0.00
N6-methyl-N6-threonylcarbamoyladenosine_2	0.00	0.00
N6,N6,2^-O-trimethyladenosine	0.00	0.00
N6,N6-dimethyladenosine	0.02	0.02
N6-threonylcarbamoyladenosine_1	0.00	0.00
N6-threonylcarbamoyladenosine_2	0.00	0.00
O6-methylguanine	0.00	0.00
pseudouridine	0.05	0.05
uridine	1.00	1.00
uridine 5-oxyacetic acid methyl ester_1	0.00	0.00
uridine 5-oxyacetic acid methyl ester_2	0.00	0.00
uridine 5-oxyacetic acid methyl ester_3	0.00	0.00

Factors:

F1	Genotype:Synthetic 23S_rRNA \| Sample source:In vitro transcription
F2	Genotype:TK0008 deletion \| Sample source:23S_rRNA_Enrichment
F3	Genotype:TK0008 deletion \| Sample source:Total RNA
F4	Genotype:Wild-type \| Sample source:23S_Fragment_Depletion
F5	Genotype:Wild-type \| Sample source:23S_Fragment_Enrichment
F6	Genotype:Wild-type \| Sample source:23S_rRNA_Enrichment
F7	Genotype:Wild-type \| Sample source:Total RNA