Clustering data with hclust algorithm for (Study ST002287)

(Analysis AN003739)
MetaboliteStructureF1F2F3F4F5F6F7F8F9F10F11F12F13F14F15F16F17F18F19F20F21F22F23F24F25F26F27F28F29F30F31F32F33F34F35F36
UridineME548874NANA0.070.070.08NA0.090.050.060.070.230.070.07NA0.15NA0.160.080.160.131.780.080.070.170.321.621.9512.750.740.091.701.890.223.812.040.22
Aspartic acidME5488192.680.720.860.450.232.097.065.350.220.102.960.301.280.392.150.210.297.580.020.030.090.020.090.040.080.140.020.030.050.100.140.170.020.030.010.00
Fumaric acidME5488052.371.611.415.133.141.131.381.662.102.530.810.810.751.431.271.921.460.560.010.010.300.210.190.180.460.430.070.600.380.050.150.850.030.450.090.04
GuanineME5488340.991.123.153.064.271.610.780.612.133.451.571.122.141.211.761.013.181.320.020.020.030.010.010.010.050.10NA0.010.010.010.100.070.040.020.020.01
N-AcetylalanineME5488141.340.763.302.721.101.900.732.192.700.511.001.911.032.412.861.664.093.510.000.010.020.010.010.020.030.070.000.020.010.010.030.020.000.010.000.00
Pyruvic acidME5488880.751.171.521.010.930.971.781.730.581.260.580.891.140.600.801.020.931.211.650.720.530.520.630.921.012.830.511.261.300.290.991.170.410.630.960.83
12-Hydroxy lauric acidME5488681.041.880.81NA2.680.90NANA1.560.951.231.202.390.98NA1.020.981.840.62NA0.620.530.58NA0.490.580.570.840.410.72NANA0.680.610.500.78
N-Methyl-glutamic acidME5488402.412.831.530.730.881.261.171.210.750.782.791.630.700.741.221.970.950.560.471.010.540.420.770.540.450.940.560.480.390.780.640.461.960.440.480.56
Glucose 6-phosphateME5488752.171.951.610.470.38NA3.600.850.660.380.360.801.683.080.420.491.100.90NANA0.250.28NANA0.430.74NANANA0.290.690.43NANANANA
2,6-Diaminopimelic acidME5488621.240.671.320.480.261.051.101.920.280.372.570.491.821.830.580.400.373.16NANANANANANANANANANANANANA0.06NANANA0.04
UMPME5488811.820.812.191.170.912.272.282.320.180.292.17NA0.400.250.88NA0.143.940.09NA0.460.060.270.080.600.99NANA0.32NANA0.11NANANANA
IsoleucineME5488151.631.072.871.322.301.941.991.042.304.162.270.860.703.210.712.110.622.04NA0.040.100.090.120.04NA0.020.100.040.030.060.040.040.080.030.030.03
Nicotinic acidME5488110.860.991.621.551.180.702.492.321.631.672.431.953.702.950.594.003.600.940.000.010.070.030.050.020.040.170.010.040.040.050.120.140.010.020.010.00
KetoleucineME5488130.870.712.431.682.172.061.591.272.691.621.191.941.731.572.384.121.640.790.180.190.240.130.180.180.110.340.190.300.190.150.090.190.260.140.220.28
MevalolactoneME5488300.831.181.891.453.002.512.342.150.780.950.901.763.921.102.003.391.580.98NANA0.010.020.010.010.020.040.030.010.02NA0.010.040.010.010.010.01
3-Hydroxyanthranilic acidME5488370.790.680.591.101.441.611.860.682.872.491.591.070.320.821.381.993.311.000.22NA0.17NANA0.15NA0.330.400.24NANA0.380.15NANA0.130.26
PyruvaldehydeME5488871.461.750.470.661.000.470.920.772.473.341.741.520.791.490.421.242.211.730.381.071.090.270.280.320.600.650.441.600.830.340.780.870.320.370.630.72
ThreonineME5488090.671.211.300.020.010.043.012.602.482.332.831.962.632.412.471.751.813.090.000.000.040.020.020.010.050.140.000.010.030.020.010.010.00NANANA
4-Acetamidobutanoic acidME5488240.851.071.110.970.542.511.612.051.511.813.902.332.723.081.022.431.082.650.170.050.390.110.160.090.150.430.080.120.260.130.120.130.110.080.070.10
Isobutyric acidME5488011.720.410.780.891.930.982.881.151.982.003.150.941.472.041.662.311.432.120.210.400.460.190.220.240.240.190.240.940.200.290.250.340.430.330.420.57
GuanosineME5488853.811.920.651.881.131.961.920.950.640.552.100.331.140.870.900.190.491.200.17NANA0.05NANANA0.06NANA0.040.05NANANANANANA
N-FormylmethionineME5488541.732.051.611.243.800.850.921.641.191.571.511.701.081.751.620.901.711.580.05NA0.04NA0.03NA0.040.06NA0.040.030.110.030.09NA0.04NANA
PterinME5488421.071.450.850.852.411.151.410.430.771.302.171.691.211.301.052.701.630.790.21NA0.240.210.240.200.240.22NANA0.22NANANANANANANA
Ophthalmic acidME5488790.692.050.680.811.251.331.691.641.181.091.520.831.520.711.121.331.051.95NANA0.700.09NA0.19NA0.08NA0.450.21NA0.270.80NA2.490.27NA
Quinaldic acidME5488460.380.550.341.851.113.010.900.640.240.841.661.040.950.690.320.851.472.15NANANANANANANA0.01NANANANANANANANANANA
N-Acetylaspartic acidME5488510.600.811.640.791.801.110.871.223.070.720.852.631.910.971.160.820.471.18NA0.200.17NA0.23NANANA0.18NANANANA0.41NA0.19NANA
IndolepyruvateME5488641.442.040.470.740.500.762.722.320.780.960.510.902.442.530.440.751.030.36NANANANANANANA0.11NANANANA0.060.080.06NANANA
Ureidopropionic acidME5488171.701.280.521.280.490.702.492.320.680.671.591.021.680.860.410.300.470.41NANANANANANANA0.16NANANANANANANANANANA
TryptophanME5488661.011.162.651.161.292.511.211.280.890.891.471.461.061.302.280.360.461.47NANA0.02NA0.01NANA0.04NA0.010.01NA0.01NANANANANA
N-AcetylasparagineME5488490.761.110.632.191.500.560.791.411.370.351.451.030.980.521.310.381.491.11NANANANANANANA0.06NANANANANANANANANANA
XanthosineME5488780.771.352.272.241.330.870.981.511.110.281.421.340.740.661.100.490.710.69NANANANANANANA0.08NA0.05NANANANANANANANA
RiboseME5488321.220.981.181.910.691.951.580.780.881.351.121.111.071.601.280.470.580.54NANANANA0.31NA0.261.07NANANANA0.220.84NANANANA
5-Hydroxy-tryptophanME5488701.242.340.481.130.681.280.871.601.021.860.990.682.031.090.850.671.450.62NANANANANANA0.030.04NANANANA0.03NANANANANA
trans-Aconitic acidME5488480.310.690.320.420.531.241.360.541.671.400.771.361.411.721.151.051.650.40NANANANANANANANANANANANANANANANANANA
ArabinoseME5488331.851.281.620.810.881.740.731.051.901.141.071.421.441.930.511.800.850.87NANA0.02NANANA0.020.020.02NANANA0.03NANANANANA
N-Acetylglutamic acidME5488611.191.311.130.801.312.121.860.521.830.951.101.041.562.230.951.441.241.28NANANA0.01NANA0.020.09NANANANA0.010.02NA0.01NANA
LactoseME5488831.271.261.481.310.920.711.681.590.660.421.340.480.310.890.980.410.331.97NANANANANANANANANANANANANANANANANANA
PhenylalanineME5488440.841.201.020.821.501.291.431.061.181.280.811.580.611.901.571.071.321.41NANANANA0.02NANA0.06NA0.02NANA0.03NANANANANA
3^,5^ cyclic GMPME5488841.251.251.371.350.791.611.811.481.491.301.211.141.401.431.281.150.981.53NANANANANA0.010.010.07NANA0.02NA0.040.03NANANANA
2,3-cAMPME5488821.101.291.251.381.281.301.401.490.880.931.220.881.120.961.320.800.921.44NANANANA0.01NANA0.01NANA0.01NANANANANANANA
N(2)-AcetyllysineME5488581.261.281.381.070.821.181.492.340.971.011.130.941.081.321.121.240.841.51NANANANANANANA0.000.00NA0.00NA0.00NANANANANA
CystathionineME5488710.641.290.680.630.880.751.160.731.181.010.971.031.111.471.040.711.241.47NANANANANANANANANANANANANANANANANANA
CitrullineME5488530.691.221.130.970.951.041.451.330.951.090.970.751.041.160.820.970.680.78NANANANANANANANANANANANANANANANANANA
CarnosineME5488720.911.141.020.810.600.871.551.380.930.801.010.751.361.210.930.740.841.16NANANANANANANANANANANANANANANANANANA
LysineME5488270.650.871.230.920.691.001.501.161.080.940.920.961.281.010.940.830.881.12NANANANANANANANANANANANANANANANANANA
N-AcetylmethionineME5488632.921.630.903.421.261.382.200.773.562.510.792.582.031.411.641.051.631.19NA0.010.070.080.060.020.180.290.010.060.060.020.090.110.010.03NA0.01
XanthineME5488351.602.133.042.022.081.032.862.831.242.460.612.812.231.181.701.952.630.550.020.010.140.040.020.020.070.220.020.030.140.030.090.090.020.050.010.01
Hippuric acidME5488551.062.492.991.332.671.882.461.381.730.831.381.700.601.391.562.093.092.910.020.010.01NA0.010.010.030.210.010.010.010.010.020.030.010.01NA0.01
N-AcetylphenylalanineME5488670.643.021.181.962.811.661.481.092.081.022.262.681.660.821.892.062.952.360.010.020.010.030.02NA0.040.040.020.010.01NA0.070.020.020.020.010.02
N-AcetylglycineME5488060.791.731.333.091.681.232.450.731.911.641.661.313.681.491.960.992.672.390.090.110.250.200.190.280.160.230.140.110.190.160.140.190.140.090.440.17
Pyroglutamic acidME5488122.021.002.352.661.001.362.323.072.511.912.311.292.450.652.242.381.072.930.010.010.020.020.020.030.040.090.000.020.050.040.110.020.000.010.000.00
Pantothenic acidME5488690.942.681.591.730.741.284.011.473.501.811.411.141.511.161.671.281.661.54NANA0.150.070.090.050.180.730.030.110.040.040.150.20NA0.020.010.01
ValineME5488071.501.942.351.691.710.943.051.373.211.351.252.461.921.182.190.962.101.280.03NA0.040.030.040.03NA0.030.060.030.030.02NA0.030.070.040.040.03
Succinic acidME5488082.301.442.821.781.711.451.560.692.691.581.743.310.972.371.661.142.211.800.010.020.540.320.170.180.070.140.100.310.240.120.110.160.010.180.060.02
N-FormylglycineME5488021.720.942.312.001.421.902.041.612.481.980.791.943.333.051.271.442.431.940.070.120.130.100.050.070.080.090.050.060.050.050.110.110.060.050.130.05
4-Hydroxybenzoic acidME5488231.660.881.661.481.792.781.821.021.442.521.011.202.691.421.172.761.452.220.350.330.270.550.350.270.290.230.220.270.240.230.220.360.340.210.140.16
AlanineME5488890.441.171.941.751.821.482.111.641.642.360.731.842.561.171.291.671.582.060.160.100.140.08NA0.180.11NA0.10NA0.110.210.120.17NA0.110.15NA
3-Hydroxyphenylacetic acidME5488361.602.962.051.831.211.501.322.191.342.472.391.021.301.673.161.341.702.960.080.160.090.090.080.080.350.090.090.090.090.110.090.120.110.120.070.08
N-AcetylserineME5488282.081.631.411.891.410.841.390.761.882.871.911.631.481.752.580.932.251.90NANA0.040.040.030.030.020.06NA0.030.050.020.020.02NA0.02NA0.02
2-Aminobenzoic acidME5488220.650.802.182.131.812.010.950.822.272.072.261.940.790.782.001.972.122.19NANA0.040.010.020.010.010.03NA0.030.050.030.01NANA0.020.01NA
Adipic acidME5488251.601.261.871.561.771.501.331.371.941.621.902.171.511.611.751.192.380.770.290.280.190.570.350.480.400.680.330.400.420.350.400.710.180.360.250.29
Glutaric acidME5488161.121.292.121.932.001.891.371.641.421.451.951.352.031.682.230.610.971.960.120.180.620.640.820.180.150.460.370.430.220.190.450.340.380.840.250.36
HistidineME5488382.231.561.851.622.312.572.041.751.621.622.851.371.661.722.922.741.381.440.020.020.060.030.040.030.070.140.020.030.040.030.080.090.010.020.010.00
MethionineME5488311.231.362.642.350.740.881.991.912.062.061.242.170.981.571.921.932.271.470.01NA0.010.010.000.000.010.07NA0.010.020.010.020.07NA0.00NANA
TyrosineME5488561.361.871.050.880.801.612.671.781.671.301.421.952.082.122.191.391.511.20NA0.01NANA0.010.010.010.02NA0.010.01NA0.030.02NA0.010.00NA
N-AcetylleucineME5488471.311.402.621.542.232.172.702.312.151.472.371.420.692.481.582.262.302.300.020.010.030.030.020.030.130.140.010.020.040.050.050.110.000.020.000.00
HypoxanthineME5488211.940.692.242.142.142.182.232.122.031.882.202.161.261.772.061.831.872.500.010.010.020.040.030.030.090.170.030.030.050.030.090.100.020.020.020.01
3-Hydroxybutyric acidME5488031.811.962.051.921.322.072.511.892.201.902.282.261.681.911.031.542.181.800.030.030.240.050.080.070.140.330.040.070.090.110.090.120.090.030.030.10
UracilME5488041.931.932.172.192.072.142.092.052.011.841.821.631.641.731.921.571.732.140.060.030.030.030.030.050.130.250.060.040.040.070.140.180.110.090.040.03
Glutamic acidME5488291.611.661.831.691.621.812.412.072.141.991.932.022.082.001.911.912.082.090.020.010.060.040.050.030.100.210.020.030.040.040.140.230.010.090.010.01
2-HydroxybenzaldehydeME5488101.721.822.121.841.611.932.662.151.981.812.131.912.212.071.881.631.852.140.010.010.060.020.020.030.060.120.010.020.030.030.050.040.010.010.010.01
ArginineME5488501.861.862.111.991.892.032.241.981.981.921.951.992.041.961.941.832.012.070.010.010.030.020.020.020.020.070.010.010.030.020.050.020.010.010.000.00
Indoleacetic acidME5488521.401.471.821.781.871.701.670.971.891.841.771.871.541.541.831.972.061.65NANA0.070.020.010.020.020.070.010.020.040.040.020.03NA0.01NANA
GlutamineME5488261.561.681.731.491.201.592.302.021.521.431.711.442.111.851.701.411.401.730.00NA0.00NA0.010.000.000.02NA0.01NA0.010.010.030.000.02NANA
OrnithineME5488181.481.491.681.671.581.711.941.711.741.571.591.681.711.681.711.471.741.73NA0.000.010.00NA0.010.010.05NA0.000.010.000.030.01NA0.00NANA
GlutathioneME5488800.160.30NANANANA0.440.250.060.07NA0.040.400.570.080.020.03NA0.10NA2.341.050.700.363.295.700.170.650.590.522.715.81NA0.58NA0.02
InosineME548877NANANANANA0.070.06NANA0.08NANANANA0.06NA0.10NA2.91NA1.161.140.540.701.334.780.071.030.990.682.212.200.150.860.530.34
AdenineME5488200.510.201.141.090.760.481.280.450.861.161.232.461.222.440.280.701.080.770.651.080.370.420.320.280.431.780.210.281.270.410.495.381.151.701.090.59
10-Hydroxydecanoic acidME548859NA1.210.54NA0.840.54NANANA1.07NA0.980.67NA0.911.52NA0.720.43NA0.510.743.411.450.440.430.350.410.711.301.280.332.091.570.951.60
D-FucoseME5488430.18NANANA0.120.16NANA0.14NANA0.14NA0.18NANANA0.130.470.621.471.180.921.051.310.751.600.482.150.830.872.050.932.432.891.97

Factors:

F1sample_site:Intra | strain:GP61 | biologial_rep:1 | technical_rep:1
F2sample_site:Intra | strain:GP61 | biologial_rep:1 | technical_rep:2
F3sample_site:Intra | strain:GP61 | biologial_rep:4 | technical_rep:1
F4sample_site:Intra | strain:GP61 | biologial_rep:4 | technical_rep:2
F5sample_site:Intra | strain:GP61 | biologial_rep:4 | technical_rep:3
F6sample_site:Intra | strain:GP61 | biologial_rep:4 | technical_rep:4
F7sample_site:Intra | strain:KO | biologial_rep:1 | technical_rep:1
F8sample_site:Intra | strain:KO | biologial_rep:1 | technical_rep:2
F9sample_site:Intra | strain:KO | biologial_rep:4 | technical_rep:1
F10sample_site:Intra | strain:KO | biologial_rep:4 | technical_rep:2
F11sample_site:Intra | strain:KO | biologial_rep:4 | technical_rep:3
F12sample_site:Intra | strain:KO | biologial_rep:4 | technical_rep:4
F13sample_site:Intra | strain:WT | biologial_rep:1 | technical_rep:1
F14sample_site:Intra | strain:WT | biologial_rep:1 | technical_rep:2
F15sample_site:Intra | strain:WT | biologial_rep:4 | technical_rep:1
F16sample_site:Intra | strain:WT | biologial_rep:4 | technical_rep:2
F17sample_site:Intra | strain:WT | biologial_rep:4 | technical_rep:3
F18sample_site:Intra | strain:WT | biologial_rep:4 | technical_rep:4
F19sample_site:SN | strain:GP61 | biologial_rep:1 | technical_rep:1
F20sample_site:SN | strain:GP61 | biologial_rep:1 | technical_rep:2
F21sample_site:SN | strain:GP61 | biologial_rep:4 | technical_rep:1
F22sample_site:SN | strain:GP61 | biologial_rep:4 | technical_rep:2
F23sample_site:SN | strain:GP61 | biologial_rep:4 | technical_rep:3
F24sample_site:SN | strain:GP61 | biologial_rep:4 | technical_rep:4
F25sample_site:SN | strain:KO | biologial_rep:1 | technical_rep:1
F26sample_site:SN | strain:KO | biologial_rep:1 | technical_rep:2
F27sample_site:SN | strain:KO | biologial_rep:4 | technical_rep:1
F28sample_site:SN | strain:KO | biologial_rep:4 | technical_rep:2
F29sample_site:SN | strain:KO | biologial_rep:4 | technical_rep:3
F30sample_site:SN | strain:KO | biologial_rep:4 | technical_rep:4
F31sample_site:SN | strain:WT | biologial_rep:1 | technical_rep:1
F32sample_site:SN | strain:WT | biologial_rep:1 | technical_rep:2
F33sample_site:SN | strain:WT | biologial_rep:4 | technical_rep:1
F34sample_site:SN | strain:WT | biologial_rep:4 | technical_rep:2
F35sample_site:SN | strain:WT | biologial_rep:4 | technical_rep:3
F36sample_site:SN | strain:WT | biologial_rep:4 | technical_rep:4
Data matrix
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