Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST002846)

(Analysis AN004664)

Metabolite	Structure	F1	F2	F3
ornithine	ME741926	0.09	2.75	0.16
imidazole-4-acetate	ME741880	0.39	2.97	0.86
quinolinic acid	ME741947	0.58	2.69	0.72
cystine	ME741803	1.73	0.12	1.15
cytidine	ME741804	1.74	0.29	0.97
guanidine	ME741866	1.62	0.37	0.85
N-acetyl-DL-serine	ME741908	2.25	0.23	0.53
glyceric acid	ME741860	2.06	0.33	0.61
4-phosphopantothenate	ME741748	1.95	0.37	0.84
galactosamine / glucosamine	ME741847	1.99	0.25	0.75
glyceraldehyde	ME741859	1.28	0.36	0.75
acetyl-CoA	ME741761	1.40	NA	0.87
6-methylnicotinamide	ME741755	1.08	NA	0.76
isonictinic acid	ME741883	1.13	NA	0.73
dihydroorotate	ME741821	1.06	NA	0.88
2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine	ME741724	1.02	NA	0.95
cysteine-S-sulfate	ME741802	1.00	NA	1.00
butyric acid(iso)	ME741784	1.76	0.14	0.33
homocysteine	ME741873	1.23	NA	0.30
dehydroascorbic acid	ME741813	0.97	1.03	NA
2-keto-isovaleric acid	ME741729	1.25	0.74	1.07
butyric acid	ME741783	1.26	0.77	1.04
pseudouridine	ME741941	1.30	0.82	0.88
galactose / glucose	ME741848	1.24	0.80	0.96
picolinic acid	ME741937	1.25	0.81	0.94
spermine	ME741957	1.21	0.53	1.14
1-methylnicotinamide+	ME741721	1.08	0.82	1.10
gulonic-lactone	ME741870	1.14	0.75	1.11
malonyl-CoA	ME741897	1.10	0.63	1.09
xanthine	ME741979	1.10	0.68	1.22
homovanillic acid	ME741875	1.61	0.82	0.88
glucono-lactone	ME741853	1.47	0.82	0.70
pantothenic acid	ME741930	1.36	0.83	0.81
proline	ME741938	1.41	0.77	0.81
2-ketovaleric acid	ME741730	1.40	0.95	0.66
serotonin	ME741954	1.42	0.98	0.60
3-aminoisobutanoate	ME741738	1.29	0.96	0.75
valine	ME741978	1.31	1.02	0.67
S-adenosylmethioninamine+	ME741950	0.97	1.14	0.47
tryptamine	ME741965	0.97	1.19	0.54
sarcosine	ME741952	0.92	1.38	0.54
anandamide	ME741775	1.16	1.46	0.53
DOPAC	ME741824	1.05	1.47	0.60
IMP	ME741881	0.53	1.20	1.27
F1P	ME741839	0.65	0.85	1.20
inosine	ME741882	0.58	0.94	1.34
L-tyrosine methyl ester	ME741893	0.76	0.98	1.20
3- / 4-hydroxyphenylacetic acid / vanillin /	ME741734	0.77	1.03	1.20
methylmalonic acid	ME741902	0.74	1.03	1.23
2-hydroxybutanoic acid	ME741728	0.91	0.91	1.18
5-methylcytosine	ME741751	0.87	0.99	1.14
6-phosphoglucono-D-lactone	ME741758	0.84	0.94	1.14
1,3-bisphospho-D-glycerate	ME741720	0.83	0.80	1.18
N-acetylaspartic acid	ME741905	0.76	0.85	1.39
citraconic acid	ME741791	0.78	0.89	1.33
cytosine	ME741805	0.79	0.91	1.29
octopamine	ME741925	0.85	1.17	0.98
succinic acid	ME741958	0.85	1.17	0.98
lactic acid	ME741887	0.88	1.15	0.97
levulinic acid	ME741891	0.87	1.13	1.00
uracil	ME741973	0.82	1.24	0.94
phenylalanine	ME741932	0.79	1.25	0.96
serine	ME741953	0.80	1.24	0.96
choline+	ME741790	0.80	1.20	1.00
allantoin	ME741773	0.80	1.22	0.98
N-acetyl-DL-alanine	ME741907	0.82	1.21	0.97
citramalic acid	ME741792	0.79	1.18	1.03
CMP	ME741795	0.78	1.14	1.07
tyramine	ME741967	0.78	1.15	1.07
ethyl acetate	ME741837	0.82	1.06	1.12
histidine	ME741872	0.86	1.09	1.05
putrescine	ME741942	0.84	1.09	1.09
3- / 7-methylguanine	ME741735	0.66	1.34	1.00
O-acetyl-L-serine	ME741924	0.70	1.32	0.98
adenosine	ME741764	0.73	1.23	1.04
nicotinamide	ME741918	0.70	1.28	1.03
glycine	ME741862	0.79	1.42	0.79
asparagine	ME741778	0.73	1.37	0.90
kynurenine	ME741886	0.77	1.35	0.89
tryptophan	ME741966	0.75	1.34	0.91
homoserine / theronine	ME741874	0.81	1.28	0.91
glutamine	ME741855	0.81	1.31	0.89
pyrroline hydroxycarboxylic acid	ME741945	0.78	1.32	0.90
pyruvic acid	ME741946	1.07	1.07	0.86
thymine	ME741964	1.02	1.12	0.85
alanine methyl ester	ME741772	0.91	1.23	0.86
itaconic acid	ME741884	0.94	1.15	0.91
taurine	ME741961	1.01	1.25	0.75
1-phenylethylamine	ME741722	0.97	1.21	0.82
IDA	ME741878	1.01	1.16	0.83
uric acid	ME741975	1.01	1.18	0.81
a-KG	ME741770	0.99	1.08	0.71
cortisol	ME741796	1.13	1.10	0.73
dopamine	ME741826	1.12	1.12	0.76
nicotinic acid	ME741920	1.14	1.10	0.76
3- / 4 -hydroxybutanoic acid	ME741733	1.24	0.92	0.85
pyroglutamic acid	ME741944	1.14	0.95	0.78
leucine / leucine(iso)	ME741890	1.14	1.02	0.84
DOPAL	ME741825	1.17	0.96	0.87
DOPEG	ME741828	1.16	0.96	0.88
mevalonic acid	ME741903	1.15	0.87	0.98
tyrosine	ME741968	1.11	0.98	0.91
fructose / mannose	ME741844	1.08	0.95	0.97
sorbitol / galactitol / L-iditol / manitol	ME741955	1.11	0.95	0.95
glutaconic acid	ME741854	1.03	0.91	1.06
folic acid	ME741843	1.00	1.00	1.01
methionine	ME741899	0.92	1.05	1.03
D-arabinono-1,4-lactone	ME741808	0.89	NA	1.43
epinephrine	ME741836	1.05	0.57	1.38
arginine	ME741776	0.98	0.68	1.34
phenylephrine / synephrine	ME741933	0.94	0.71	1.35
guanosine	ME741869	0.91	0.49	1.60
uridine	ME741976	1.24	0.25	1.52
GalNAC/GlcNAC/ManNAC	ME741849	1.16	0.46	1.38
thymidine	ME741963	1.19	0.47	1.34
hypoxanthine	ME741877	1.15	0.37	1.48
agmatine	ME741768	1.06	0.41	1.53
DOPET	ME741829	1.06	0.44	1.50
dopamine quinone	ME741827	NA	0.51	1.73
deoxyinosine	ME741815	0.23	0.28	1.76
nebularine	ME741917	0.23	0.28	1.76
adenylosuccinate	ME741765	0.54	0.74	1.50
CDP-choline	ME741788	0.61	0.86	1.53
kynurenic acid	ME741885	0.65	0.80	1.46
orotic acid	ME741927	0.47	0.56	1.70
guanine	ME741868	0.56	0.62	1.82
spermidine	ME741956	0.64	0.59	1.76
N-methyltryptamine	ME741921	NA	1.10	0.90
2,3-bisphospho-D-glycerate	ME741725	NA	1.01	0.99
dAMP	ME741807	NA	0.93	1.07
dTTP	ME741833	0.07	1.23	NA
N-carbamoyl-L-aspartate	ME741916	NA	1.48	0.04
dCDP	ME741810	0.06	1.88	0.15
dimethylglycine	ME741822	NA	1.56	0.44
phosphocreatine	ME741934	0.34	2.14	0.52
citrate / citrate(iso)	ME741793	0.20	2.20	0.60
D-ribose-1/5-phosphate / D-ribulose 5-phosphate	ME741830	0.25	2.17	0.58
creatine	ME741797	0.27	2.31	0.42
GAP / DHAP	ME741850	0.31	2.25	0.44
dCTP	ME741812	0.16	2.30	0.54
b-alanine	ME741781	0.14	2.39	0.47
S-adenosyl-L-methionine+	ME741949	0.20	2.35	0.45
fumaric acid	ME741845	0.25	1.96	0.57
N-acetylaspartylglutamic acid	ME741906	0.20	1.83	0.58
2- / 3-phosphoglycerate	ME741723	0.45	1.93	0.62
D-sedoheptulose-7-phosphate	ME741831	0.49	1.96	0.55
phosphoenolpyruvate	ME741935	0.45	2.00	0.55
GABA	ME741846	0.39	2.06	0.54
NADPH	ME741915	0.36	1.96	0.57
cystathionine	ME741800	0.41	1.98	0.61
phosphorylcholine+	ME741936	0.39	2.02	0.59
UDP	ME741969	0.40	1.88	0.71
dCMP	ME741811	0.36	1.99	0.65
UTP	ME741977	0.38	1.92	0.69
3-phospho-serine	ME741744	0.35	1.94	0.71
glutathione	ME741857	0.35	1.96	0.68
5^-methylthioadenosine	ME741753	0.29	1.97	0.74
CTP	ME741799	0.29	1.90	0.82
D-galactonic acid / D-gluconic acid	ME741818	0.32	1.91	0.77
N1/N8-acetylspermidine	ME741904	0.57	1.60	0.50
norepinephrine	ME741923	0.94	1.81	0.54
6-phosphogluconic acid	ME741757	0.80	1.67	0.52
D-galactosamine/glucosamine-6-phosphate	ME741820	0.76	1.80	0.44
3-hydroxykynurenine	ME741740	0.59	1.50	1.11
(S)-4-hydroxymandelonitrile	ME741719	0.59	1.41	1.00
GDP	ME741851	0.52	1.41	1.08
GMP	ME741864	0.55	1.34	1.10
ATP / dGTP	ME741780	0.43	1.55	1.02
GTP	ME741865	0.32	1.67	1.02
aconitic acid	ME741762	0.38	1.52	0.69
succinyl-CoA	ME741960	0.31	1.46	0.71
adenine	ME741763	0.34	1.78	0.89
4-hydroxyphenylpyruvic acid	ME741746	0.59	1.64	0.73
malic acid	ME741896	0.49	1.64	0.77
glutaminic acid	ME741856	0.54	1.73	0.74
NAD+	ME741912	0.52	1.69	0.78
UDP-D-glucose	ME741970	0.54	1.70	0.77
maleic acid	ME741895	0.58	1.73	0.88
hydroxyphenyllactic acid	ME741876	0.51	1.62	0.88
ADP / dGDP	ME741766	0.43	1.68	0.89
NADP+	ME741914	0.45	1.69	0.86
XMP	ME741982	0.37	1.71	0.68
glycerol 2/3-phosphate	ME741861	0.51	1.81	0.67
UMP	ME741972	0.51	1.81	0.69
F-1,6/2,6-DP	ME741838	0.46	1.83	0.70
L-NMMA	ME741892	0.46	1.79	0.74
NMN	ME741922	0.39	1.82	0.79
CDP	ME741787	0.43	1.78	0.79
urea	ME741974	0.45	1.76	0.79
F6P / G1P / G6P	ME741840	0.70	1.65	0.65
2-HG	ME741727	0.70	1.57	0.73
acetylcholine+	ME741760	0.76	1.53	0.71
4-trimethylammoniobutanoate+	ME741749	0.57	1.55	0.88
AMP / dGMP	ME741774	0.57	1.50	0.93
betaine	ME741782	0.53	1.51	0.96
UDP-N-acetyl-galactosamine/UDP-N-acetyl-glucosamine	ME741971	0.68	1.50	0.82
alanine	ME741771	0.65	1.56	0.79
lysine	ME741894	0.63	1.57	0.80
GDP-L-fucose	ME741852	0.62	1.53	0.85
L-arginino-succinate	ME741888	0.62	1.53	0.85
carnitine+	ME741786	0.62	1.55	0.83
creatinine	ME741798	0.62	1.56	0.82
deoxyuridine	ME741816	0.69	1.43	0.88
N-acetylglucosamine 1/6-phosphate	ME741910	0.71	1.44	0.85
aspartic acid	ME741779	0.64	1.48	0.89
glutathione disulfide	ME741858	0.62	1.45	0.93

Factors:

F1	genotype:ApoE-KO \| treatment:no treatment
F2	genotype:wild-type \| treatment:IL-4
F3	genotype:wild-type \| treatment:no treatment

Data matrix