Clustering data with hclust algorithm for A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection (Study ST000083)
GCMS positive ion mode (Analysis AN000135)| Metabolite | Structure | F1 | F2 | F3 | F4 | F5 | F6 | F7 | F8 | F9 | F10 | F11 | F12 | F13 | F14 | F15 | F16 | F17 | F18 | F19 | F20 | F21 | F22 | F23 | F24 | F25 | F26 | F27 | F28 | F29 | F30 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| hypoxanthine | ME656452 | 1.37 | 1.52 | 1.42 | 1.18 | 1.17 | 1.21 | 0.44 | 0.02 | 1.37 | 1.32 | 1.19 | 2.32 | 2.48 | 2.04 | 0.52 | 1.45 | 1.83 | 1.65 | 0.80 | 1.19 | 0.38 | 0.22 | 0.39 | 0.28 | 0.38 | 0.32 | 0.15 | 0.63 | 0.36 | 0.38 |
| L-homoserine | ME656457 | 0.90 | 1.41 | 1.82 | 1.06 | 0.78 | 1.38 | 0.29 | 0.30 | 1.51 | 1.62 | 1.19 | 1.77 | 1.59 | 1.25 | 0.41 | 1.68 | 1.74 | 1.60 | 1.48 | 0.65 | 0.38 | 0.38 | 0.47 | 0.46 | 0.82 | 0.52 | 0.46 | 0.75 | 0.55 | 0.78 |
| L-glutamic acid | ME656455 | 0.47 | 1.66 | 1.21 | 0.43 | 1.00 | 1.78 | 1.62 | 1.24 | 0.10 | 1.06 | 1.21 | 1.17 | 1.47 | 1.12 | 0.76 | 0.82 | 0.47 | 1.43 | 1.57 | 1.55 | 0.28 | 0.46 | 1.39 | 0.42 | 0.15 | 1.33 | 1.03 | 0.91 | 1.14 | 0.76 |
| 2-ketohexanoic acid | ME656449 | 0.94 | 0.64 | 1.14 | 1.04 | 1.13 | 0.62 | 0.89 | 0.99 | 1.02 | 0.60 | 1.19 | 1.23 | 0.69 | 1.11 | 1.22 | 1.03 | 1.22 | 1.47 | 0.99 | 1.11 | 0.87 | 0.94 | 1.11 | 1.04 | 0.94 | 1.03 | 0.80 | 1.38 | 0.78 | 0.82 |
| methionine sulfoxide | ME656459 | 1.31 | 1.07 | 0.85 | 1.15 | 0.70 | 0.69 | 0.87 | 0.24 | 1.10 | 0.49 | 0.72 | 1.60 | 0.68 | 1.46 | 0.35 | 0.90 | 1.18 | 1.10 | 0.94 | 1.12 | 0.33 | 0.73 | 1.87 | 0.64 | 1.52 | 1.04 | 1.71 | 1.17 | 1.81 | 0.63 |
| lactose | ME656454 | 0.01 | 0.06 | 0.01 | 0.00 | 0.01 | 0.02 | 0.00 | 0.06 | 0.00 | 0.02 | 0.05 | 0.01 | 0.01 | 0.01 | 0.07 | 0.01 | 0.00 | 0.01 | 2.76 | 3.24 | 1.03 | 3.32 | 2.57 | 3.03 | 0.00 | 0.02 | 4.30 | 3.92 | 3.37 | 2.09 |
| melibiose | ME656458 | 0.01 | 0.01 | NA | 0.00 | NA | NA | NA | 0.00 | 0.00 | 0.00 | 0.00 | NA | NA | NA | NA | NA | NA | 0.00 | 1.46 | 4.33 | 0.64 | 2.98 | 0.89 | 1.99 | NA | 0.01 | 2.44 | 1.62 | 1.73 | 0.88 |
| Galactinol | ME656450 | 0.11 | 0.16 | 0.03 | NA | 0.01 | NA | 0.12 | 0.19 | 0.02 | 0.14 | 0.02 | 0.03 | 0.02 | 0.01 | 0.01 | 0.01 | NA | 0.10 | 1.83 | 6.58 | 0.96 | 4.58 | 0.67 | 2.65 | 0.02 | 0.08 | 3.20 | 2.12 | 2.12 | 1.22 |
| raffinose | ME656460 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.00 | 0.00 | NA | 0.00 | NA | NA | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 2.44 | 4.92 | 0.95 | 3.98 | 1.26 | 2.99 | 0.00 | 0.01 | 3.41 | 3.05 | 2.75 | 1.19 |
| inositol | ME656453 | 0.01 | 0.03 | 0.01 | 0.01 | 0.02 | 0.01 | 0.09 | 0.00 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.96 | 3.12 | 3.56 | 1.55 | 0.01 | 0.01 | 3.22 | 2.79 | 2.02 | 4.29 | 4.74 | 3.45 |
| urea | ME656462 | 0.32 | 0.38 | 0.32 | 0.31 | 0.27 | 0.29 | 0.36 | 0.10 | 0.45 | 0.20 | 0.21 | 0.28 | 0.28 | 0.21 | 0.10 | 0.43 | 0.22 | 0.28 | 0.30 | 0.65 | 0.67 | 2.53 | 0.16 | 0.29 | 0.96 | 1.30 | 4.21 | 2.39 | 8.98 | 2.56 |
Factors:
| F1 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:1 |
| F2 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:-1 |
| F3 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:10 |
| F4 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:14 |
| F5 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:21 |
| F6 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:28 |
| F7 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:3 |
| F8 | Infection:Control | Experimental Group:Control Group 1 | Harvest Day:6 |
| F9 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:1 |
| F10 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:-1 |
| F11 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:10 |
| F12 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:14 |
| F13 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:21 |
| F14 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:28 |
| F15 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:3 |
| F16 | Infection:Control | Experimental Group:Control Group 2 | Harvest Day:6 |
| F17 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:1 |
| F18 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:-1 |
| F19 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:10 |
| F20 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:14 |
| F21 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:21 |
| F22 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:28 |
| F23 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:3 |
| F24 | Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:6 |
| F25 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:1 |
| F26 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:-1 |
| F27 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:10 |
| F28 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:14 |
| F29 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:3 |
| F30 | Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:6 |
