Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for Metabolomics analysis of multiple metabolic functions in the YjgF/YER057c/UK114 (Rid) protein family GCMS (part 2) (Study ST000118)

GCMS positive ion mode (Analysis AN000199)

Metabolite	Structure	F1	F2	F3	F4	F5
cysteine	ME681330	0.34	0.26	0.59	3.46	0.23
glutamine	ME681326	2.32	1.42	0.11	0.12	1.26
citric acid	ME681331	2.62	1.36	0.46	0.32	0.51
pantothenic acid	ME681290	2.45	1.52	0.42	0.48	0.37
glucose-1-phosphate	ME681362	2.27	1.99	0.33	0.41	0.22
UDP-N-acetylglucosamine	ME681344	2.37	2.02	0.32	0.30	0.22
alanine-alanine	ME681389	2.14	1.98	0.28	0.37	0.42
levoglucosan	ME681355	1.96	2.00	0.45	0.45	0.30
thymidine-5-phosphate	ME681347	2.05	2.10	0.38	0.33	0.32
citramalic acid	ME681375	1.48	2.33	0.40	0.57	0.30
fructose	ME681328	1.86	2.34	0.18	0.57	0.20
N-methylalanine	ME681370	1.83	2.45	0.25	0.41	0.19
xanthine	ME681286	1.98	2.33	0.30	0.41	0.14
cysteine-glycine	ME681329	1.84	2.42	0.34	0.20	0.34
3-hydroxypalmitic acid	ME681413	1.68	2.34	0.40	0.36	0.34
lauric acid	ME681323	1.76	2.26	0.32	0.36	0.42
lysine	ME681322	1.86	2.30	0.26	0.34	0.39
N-acetylaspartic acid	ME681354	2.11	2.97	0.03	0.03	0.04
norleucine	ME681396	1.95	2.85	0.09	0.08	0.20
N-carbamoylaspartate	ME681391	3.01	2.01	0.10	0.12	0.10
butyrolactam NIST	ME681299	2.69	2.45	0.05	0.06	0.04
4-aminobutyric acid	ME681411	2.78	2.48	0.00	0.02	0.01
gamma-aminobutyric acid	ME681401	2.78	2.42	0.03	0.03	0.03
norvaline	ME681395	2.40	2.78	0.01	0.01	0.02
orotic acid	ME681320	2.45	2.67	0.04	0.06	0.02
2-hydroxyglutaric acid	ME681338	0.35	0.34	3.07	0.83	0.30
lactic acid	ME681295	0.36	0.36	2.70	0.86	0.61
2-isopropylmalic acid	ME681390	0.47	0.73	2.21	1.24	0.27
inosine 5^-monophosphate	ME681356	0.40	0.26	2.30	1.58	0.36
valine	ME681342	0.09	0.10	1.51	1.30	1.84
guanine	ME681372	0.06	0.05	1.24	1.42	2.06
guanosine	ME681385	0.17	0.13	1.26	1.11	2.20
hypoxanthine	ME681358	0.19	0.26	1.29	1.68	1.45
inosine	ME681357	0.25	0.32	1.32	1.53	1.45
glyceric acid	ME681360	0.22	0.16	1.24	2.02	1.23
nicotinic acid	ME681383	0.10	0.09	1.44	1.80	1.42
ribose	ME681312	0.12	0.18	1.42	1.90	1.23
shikimic acid	ME681311	0.75	0.79	1.10	0.80	1.52
alanine	ME681376	0.59	0.54	1.01	1.28	1.50
methyl O-D-galactopyranoside	ME681397	0.71	0.74	1.20	1.11	1.19
ethanolamine	ME681374	0.60	0.66	1.10	1.10	1.47
mannose-6-phosphate NIST	ME681384	0.55	0.66	1.25	1.10	1.36
glutamic acid	ME681361	0.88	0.42	0.94	1.40	1.34
xylulose NIST	ME681341	0.34	0.44	1.36	1.58	1.16
ethanol phosphate NIST	ME681403	0.53	0.44	1.10	1.56	1.30
palmitoleic acid	ME681291	0.49	0.47	1.30	1.33	1.32
1,5-anhydroglucitol	ME681339	0.55	0.50	1.31	1.42	1.14
fructose-1-phosphate	ME681364	0.55	0.49	1.25	1.40	1.24
glycine	ME681325	0.58	0.52	1.06	2.29	0.47
glucose-6-phosphate	ME681373	0.57	0.66	1.41	1.45	0.84
tryptophan	ME681306	0.57	0.68	1.48	1.59	0.62
isoleucine	ME681296	0.36	0.50	1.59	1.72	0.71
ribose-5-phosphate	ME681392	0.37	0.34	1.63	1.93	0.63
glutathione	ME681387	0.74	2.02	0.86	0.48	0.85
ethylsuccinate NIST	ME681402	1.27	1.90	0.72	0.61	0.54
putrescine	ME681350	1.27	1.49	1.05	0.57	0.66
4-hydroxybenzoate	ME681410	1.51	1.80	0.47	0.97	0.34
2-hydroxybutanoic acid	ME681284	1.47	1.58	0.57	1.06	0.40
maltotriose	ME681371	1.41	1.49	0.55	1.23	0.38
ornithine 4tms	ME681292	1.90	1.77	0.53	0.50	0.46
thymine	ME681346	1.75	1.78	0.53	0.59	0.46
homoserine	ME681359	1.69	1.60	0.56	0.62	0.65
succinic acid	ME681310	1.65	1.60	0.72	0.71	0.43
malic acid	ME681294	1.38	1.52	0.79	0.86	0.52
pyrophosphate	ME681349	1.64	1.40	0.72	0.69	0.66
mannose	ME681283	1.54	1.34	0.65	0.93	0.63
nicotinamide	ME681367	1.71	1.29	0.65	0.87	0.60
pyruvic acid	ME681313	2.03	0.77	0.73	1.29	0.35
dodecanoic acid, isopropanol ester NIST	ME681404	1.65	0.82	1.05	0.90	0.68
O-acetylserine	ME681382	1.51	0.66	1.46	1.18	0.28
spermidine	ME681348	1.17	0.52	1.55	0.71	1.08
galactose-6-phosphate	ME681379	0.68	1.03	1.63	0.61	0.99
thymidine	ME681307	0.58	1.20	1.09	0.95	1.11
aspartic acid	ME681334	1.13	0.99	0.58	0.98	1.34
pelargonic acid	ME681289	1.36	0.74	0.80	0.97	1.20
fructose-6-phosphate	ME681380	0.64	0.93	1.12	1.41	0.83
glycolic acid	ME681298	0.94	0.81	1.22	1.07	0.95
sucrose	ME681309	0.92	0.81	1.07	1.12	1.08
p-cresol	ME681351	1.00	0.96	1.01	1.31	0.72
beta-alanine	ME681333	0.86	1.00	0.91	1.27	0.94
uracil	ME681343	0.80	0.90	0.99	1.35	0.92
hydroxylamine	ME681378	1.01	0.78	1.05	1.24	0.92
octanol NIST	ME681394	1.05	0.85	0.97	1.21	0.92
hexose-6-phosphate	ME681368	0.86	0.77	1.22	1.33	0.80
threonine	ME681308	0.83	0.77	1.22	1.32	0.84
cytidine-5-monophosphate	ME681365	0.88	0.77	1.09	1.33	0.91
benzylalcohol	ME681408	0.86	0.90	1.08	1.28	0.85
glycerol-alpha-phosphate	ME681386	0.93	0.84	1.05	1.29	0.87
methionine	ME681321	0.86	0.61	1.06	1.55	0.90
cyclohexylamine	ME681406	1.18	0.61	0.96	1.47	0.81
serine	ME681288	1.19	0.63	1.09	1.46	0.67
aminomalonate	ME681336	0.93	0.70	0.97	1.78	0.60
gluconic acid	ME681327	0.74	0.78	1.18	1.59	0.67
glucose	ME681363	0.93	0.88	1.20	1.46	0.51
maltose	ME681398	1.11	1.39	0.68	1.35	0.49
leucine	ME681399	1.15	1.12	0.88	1.26	0.61
adenine	ME681303	0.90	1.31	0.77	1.24	0.76
adenosine	ME681302	1.01	1.27	0.86	1.19	0.68
4-hydroxyphenylacetic acid	ME681409	1.17	0.81	1.19	1.21	0.65
hydroxycarbamate NIST	ME681324	1.26	0.89	1.03	0.99	0.87
oxalic acid	ME681319	1.31	0.76	1.09	1.01	0.87
tyrosine	ME681287	1.28	1.33	0.78	0.77	0.89
3,6-anhydro-D-galactose	ME681412	0.98	1.31	1.12	0.79	0.80
2,5-dihydroxypyrazine NIST	ME681304	1.05	1.36	0.96	0.62	1.02
arachidic acid	ME681335	1.03	1.34	0.88	0.83	0.92
1-monopalmitin	ME681340	1.06	1.22	0.92	0.84	0.97
bisphosphoglycerol NIST	ME681407	1.04	1.20	0.98	0.81	0.98
phosphoethanolamine	ME681366	0.95	1.14	1.17	0.80	0.93
UDP-glucuronic acid	ME681345	0.97	0.97	1.26	0.86	0.94
oleic acid	ME681353	1.14	1.06	0.90	0.85	1.08
capric acid	ME681332	1.24	0.99	0.78	1.05	0.98
proline	ME681315	1.22	0.96	0.85	1.01	1.00
1-monostearin	ME681305	1.21	1.02	0.98	0.96	0.87
benzoic acid	ME681300	1.28	1.07	0.98	0.97	0.75
adenosine-5-monophosphate	ME681301	1.21	1.30	0.94	0.85	0.74
6-deoxyglucose	ME681381	1.22	1.14	0.92	0.89	0.86
heptadecanoic acid	ME681297	1.15	1.17	0.99	0.90	0.81
fumaric acid	ME681388	1.22	1.15	1.05	0.87	0.75
hexose	ME681400	1.22	1.20	1.01	0.88	0.73
xylose	ME681285	1.00	0.99	1.22	1.04	0.76
palmitic acid	ME681318	1.00	0.99	1.05	1.04	0.91
3-phosphoglycerate	ME681337	0.93	0.99	1.06	1.10	0.91
phenol	ME681377	0.98	0.99	1.04	1.09	0.89
phosphate	ME681393	0.99	0.93	1.10	1.09	0.89
propane-1,3-diol NIST	ME681314	1.05	0.94	1.04	1.09	0.88
oxoproline	ME681352	1.07	1.10	0.87	1.01	0.96
diacetone alcohol NIST	ME681405	1.05	1.05	0.99	1.04	0.88
phenylacetic acid	ME681317	1.04	1.05	0.94	1.08	0.89
myristic acid	ME681293	1.02	1.13	1.05	0.94	0.85
stearic acid	ME681282	1.05	1.11	1.00	0.98	0.88
pentadecanoic acid	ME681369	1.05	1.11	1.00	1.05	0.80
phenylalanine	ME681316	1.10	1.16	0.95	1.03	0.78

Factors:

F1	Strain:E. coli \| Genotype:WT E. coli
F2	Strain:E. coli \| Genotype:yjeF KO
F3	Strain:S. enterica \| Genotype:single RidA KO
F4	Strain:S. enterica \| Genotype:triple RidA KO
F5	Strain:S. enterica \| Genotype:WT S. enterica

Data matrix