Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for Retinal tissue knockout to study efflux of cholesterol (AGCA1/G1 double KO - TY and LysM cre) - part II (Study ST000682)

C18 POSITIVE ION MODE (Analysis AN001051)

Metabolite	Structure	F1	F2	F3	F4	F5
plasmenyl-PE 38:1; [M+H]+@8.25	ME190038	0.87	1.84	0.57	0.69	0.99
SM 41:1; [M]+@8.08	ME189974	0.90	1.64	0.61	0.95	0.87
PC 18:0; [M+Na]+@1.93	ME189928	1.89	0.88	0.68	0.56	1.03
lysoPC 16:0; [M+H]+@1.80	ME190020	1.71	1.23	0.49	0.65	0.92
plasmenyl-PC 18:0; [M+Na]+@1.66	ME190029	1.80	1.21	0.50	0.56	0.95
lysoPE 18:1; [M+H]+@1.84	ME190026	1.59	1.22	0.57	0.82	0.84
lysoPE 22:6; [M+H]+@1.29	ME190028	1.65	1.05	0.52	0.85	0.88
lysoPC 20:3; [M+Na]+@1.47	ME190022	1.79	1.06	0.47	0.77	0.88
lysoPC 22:6; [M+H]+@1.42	ME190023	1.73	1.10	0.48	0.79	0.87
plasmenyl-PE 36:0; [M+H]+@8.22	ME190033	1.36	1.30	0.72	0.87	0.83
lysoPE 18:0; [M+H]+@2.48	ME190025	1.43	0.94	0.69	0.91	0.96
lysoPE 16:0; [M+H]+@1.69	ME190024	1.53	1.00	0.67	0.85	0.92
PS 40:5; [M+Na]+@6.07	ME189961	1.54	1.04	0.70	0.89	0.87
PC 40:9; [M+Na]+@5.44	ME189937	1.22	0.47	1.65	0.94	1.04
SM 42:4; [M]+@6.95	ME189978	0.52	0.50	1.58	1.00	1.34
PE 36:0; [M+H]+@7.91	ME189947	0.98	0.52	1.18	1.08	1.15
plasmenyl-PC 34:1; [M+Na]+@7.17	ME190031	0.89	0.70	1.18	1.03	1.14
DG 36:0; [M+NH4]+@8.88	ME189912	0.68	0.74	1.40	1.24	1.01
SM 37:2; [M]+@6.44	ME189970	0.83	0.58	1.72	1.33	0.87
PC 40:10; [M+H]+@5.56	ME189934	1.29	1.17	1.22	0.74	0.91
plasmenyl-PE 32:1; [M+H]+@6.62	ME190032	1.29	1.38	1.08	0.85	0.75
PC 38:4; [M+H]+@8.51	ME189932	0.82	1.43	1.00	0.53	1.22
PE 32:1; [M+H]+@6.25	ME189943	0.92	1.21	1.24	0.77	1.05
SM 33:1; [M+Na]+@5.55	ME189963	0.87	1.30	1.15	0.73	1.08
PC 40:8; [M+Na]+@5.82	ME189936	1.15	0.54	0.93	1.15	1.06
PE 40:8; [M+H]+@5.96	ME189958	1.22	0.55	0.84	1.31	0.92
PA 42:9; [M+Na]+@4.71	ME189927	1.18	0.54	0.44	1.32	1.04
DG 38:3; [M+NH4]+@8.31	ME189918	0.75	0.73	0.49	1.46	1.04
DG 36:4; [M+NH4]+@7.57	ME189916	0.88	0.53	0.50	1.55	1.00
TG 66:18; [M+NH4]+@9.69	ME190019	0.99	0.54	0.43	1.59	0.94
PE 42:8; [M+H]+@6.55	ME189960	1.21	0.64	0.67	1.43	0.83
TG 56:4; [M+NH4]+@10.82	ME190006	1.15	0.80	0.61	1.28	0.91
TG 58:9; [M+NH4]+@10.18	ME190014	1.08	0.83	0.74	1.41	0.80
DG 40:7; [M+NH4]+@7.54	ME189923	0.92	0.76	0.64	1.31	1.02
TG 46:0; [M+NH4]+@10.35	ME189981	0.82	0.78	0.73	1.34	1.01
TG 54:6; [M+NH4]+@10.22	ME190004	0.86	0.84	0.68	1.30	1.00
PE 38:6; [M+H]+@6.26	ME189954	1.03	0.76	0.71	1.22	1.01
TG 62:12; [M+NH4]+@10.21	ME190017	0.94	0.72	0.81	1.28	1.00
TG 58:10; [M+NH4]+@10.10	ME190010	1.02	0.61	0.76	1.36	0.98
PC 50:6; [M+Na]+@9.07	ME189941	0.99	0.69	0.73	1.36	0.96
PE 40:7; [M+H]+@6.40	ME189957	0.97	0.70	0.79	1.34	0.96
DG 38:5; [M+NH4]+@7.67	ME189920	0.96	0.70	0.61	1.54	0.86
TG 52:6; [M+Na]+@9.83	ME189998	1.05	0.61	0.56	1.55	0.87
TG 60:12; [M+NH4]+@9.99	ME190016	0.90	0.56	0.64	1.51	0.98
DG 36:3; [M+NH4]+@7.79	ME189915	0.86	0.69	0.71	1.45	0.96
TG 56:8; [M+NH4]+@10.09	ME190009	0.87	0.65	0.74	1.47	0.95
DG 38:6; [M+NH4]+@7.47	ME189921	0.91	0.79	0.73	1.43	0.89
SM 34:2; [M+Na]+@5.44	ME189965	0.94	0.73	0.68	1.44	0.91
PE 37:6; [M+H]+@6.02	ME189951	1.07	1.07	0.32	1.16	0.98
TG 54:1; [M+NH4]+@11.05	ME190000	1.32	0.85	0.60	0.97	1.04
TG 62:14; [M+NH4]+@9.83	ME190018	1.18	0.78	0.51	1.05	1.10
plasmenyl-PC 32:0; [M+Na]+@7.03	ME190030	1.09	0.97	1.28	0.97	0.92
MG 17:0; [M+Li]+@3.16	ME189926	1.01	0.92	1.12	1.03	0.98
PC 40:7; [M+H]+@6.97	ME189935	0.85	0.97	1.20	1.01	1.03
SM 36:2; [M]+@6.01	ME189968	0.70	1.02	1.16	0.95	1.14
DG 44:12; [M+NH4]+@6.99	ME189925	0.72	1.14	1.10	1.11	0.96
SM 30:1; [M]+@4.42	ME189962	0.77	1.13	1.31	1.17	0.85
PC 42:11; [M+H]+@5.82	ME189938	0.81	1.01	0.46	0.93	1.27
DG 38:4; [M+NH4]+@8.02	ME189919	0.69	0.78	0.73	1.28	1.12
DG 42:10; [M+NH4]+@7.07	ME189924	0.72	0.88	0.81	1.22	1.08
PE 42:6; [M+H]+@7.49	ME189959	0.82	0.89	0.80	1.08	1.14
TG 58:7; [M+NH4]+@10.52	ME190012	0.87	0.84	0.71	1.17	1.08
SM 44:2; [M+Na]+@8.32	ME189979	0.82	0.99	0.76	0.94	1.20
TG 52:0; [M+NH4]+@11.01	ME189993	0.81	1.06	0.84	0.99	1.11
TG 58:6; [M+NH4]+@10.77	ME190011	0.82	1.06	0.86	0.98	1.11
PE 35:1; [M+H]+@7.17	ME189946	0.69	1.05	0.66	1.14	1.10
SM 37:1; [M]+@6.90	ME189969	0.83	1.06	0.69	1.05	1.09
PE 38:7; [M+H]+@5.63	ME189955	0.99	1.16	0.65	1.14	0.91
SM 40:2; [M]+@7.27	ME189973	0.98	1.13	0.78	1.10	0.93
plasmenyl-PE 36:5; [M+H]+@6.32	ME190037	0.88	1.38	0.69	1.06	0.91
SM 42:1; [M+Na]+@8.33	ME189976	0.97	1.25	0.69	0.96	1.00
TG 48:0; [M+NH4]+@10.57	ME189983	1.09	1.06	0.72	1.25	0.81
TG 50:1; [M+NH4]+@10.57	ME189989	0.99	0.95	0.75	1.30	0.87
DG 37:4; [M+NH4]+@7.84	ME189917	1.13	1.07	0.54	1.17	0.89
SM 41:2; [M]+@7.72	ME189975	1.27	1.05	0.66	1.06	0.88
DG 32:0; [M+NH4]+@7.89	ME189910	1.07	1.12	0.96	0.99	0.92
DG 36:1; [M+NH4]+@8.47	ME189913	1.18	1.21	0.88	0.91	0.90
DG 34:0; [M+NH4]+@8.41	ME189911	1.11	1.20	0.82	1.00	0.89
plasmenyl-PE 36:1; [M+H]+@7.75	ME190034	1.06	1.22	0.85	0.93	0.95
plasmenyl-PE 38:4; [M+H]+@7.24	ME190039	0.97	0.99	0.85	0.88	1.15
plasmenyl-PE 42:6; [M+H]+@7.79	ME190044	1.05	1.14	0.71	0.93	1.03
plasmenyl-PE 40:6; [M+H]+@7.20	ME190043	1.02	1.13	0.78	0.90	1.06
PE 36:4; [M+H]+@6.34	ME189950	0.96	1.08	0.78	0.93	1.09
SM 36:1; [M]+@6.55	ME189967	0.95	1.14	0.78	0.90	1.09
PC 34:4; [M+H]+@6.14	ME189931	1.08	1.08	0.91	0.87	1.04
PE 38:4; [M+H]+@7.03	ME189952	1.07	1.04	0.80	0.90	1.08
PE 21:4; [M+H]+@1.46	ME189942	0.94	0.91	1.06	0.89	1.14
DG 36:2; [M+NH4]+@8.09	ME189914	0.96	1.14	0.94	0.88	1.05
SM 42:2; [M+Na]+@7.85	ME189977	0.96	1.04	1.11	0.97	0.99
PE 34:1; [M+H]+@6.85	ME189944	1.04	1.03	1.06	0.93	1.00
plasmenyl-PE 36:4; [M+H]+@6.69	ME190036	0.99	1.09	1.04	0.93	1.00
PC 38:5; [M+Na]+@6.46	ME189933	1.01	1.02	0.97	1.00	0.99
SM 34:1; [M]+@5.86	ME189964	0.94	1.02	0.95	0.96	1.06
SM 38:1; [M]+@7.17	ME189971	0.96	0.97	0.90	1.00	1.06
PC 34:3; [M+H]+@6.62	ME189930	0.88	1.09	0.93	1.21	0.88
PC 42:7; [M+H]+@6.71	ME189939	0.88	0.88	1.12	1.25	0.91
TG 56:7; [M+NH4]+@10.27	ME190008	0.92	0.83	0.91	1.22	0.99
plasmenyl-PE 38:6; [M+H]+@6.58	ME190041	0.96	0.88	0.97	1.07	1.04
TG 50:0; [M+NH4]+@10.79	ME189988	0.90	0.84	0.94	1.08	1.08
PE 38:5; [M+H]+@6.52	ME189953	0.87	0.93	0.96	1.15	1.00
SM 40:1; [M+Na]+@7.86	ME189972	0.88	1.00	0.92	1.11	1.00
plasmenyl-PE 36:3; [M+H]+@6.94	ME190035	1.18	1.04	0.91	1.14	0.81
PC 48:6; [M+Na]+@8.55	ME189940	1.01	1.00	0.86	1.10	0.95
PE 36:1; [M+H]+@7.46	ME189948	1.07	1.00	0.81	1.02	1.00
TG 52:1; [M+NH4]+@10.79	ME189994	1.14	1.03	0.85	1.00	0.95
PE 34:2; [M+H]+@6.43	ME189945	1.22	0.98	0.98	1.00	0.91
PE 36:2; [M+H]+@6.99	ME189949	1.13	0.90	1.00	1.04	0.96
plasmenyl-PE 38:5; [M+H]+@7.02	ME190040	1.12	0.94	1.02	1.03	0.95
lysoPE 20:4; [M+H]+@1.37	ME190027	1.23	0.99	0.80	0.95	0.98
TG 60:10; [M+NH4]+@10.30	ME190015	1.17	0.88	0.89	0.94	1.05
PC 32:0; [M+H]+@6.61	ME189929	1.17	0.89	0.83	1.06	0.96
plasmenyl-PE 40:5; [M+H]+@7.34	ME190042	1.18	0.91	0.90	1.04	0.95
lysoPC 19:0; [M+H]+@2.95	ME190021	1.26	0.80	1.03	1.04	0.93
SM 35:2; [M]+@5.76	ME189966	1.25	0.74	0.92	1.10	0.95
TG 40:0; [M+NH4]+@9.47	ME189980	1.16	0.82	0.90	1.23	0.86
TG 58:8; [M+NH4]+@10.37	ME190013	1.14	0.72	0.85	1.24	0.93
DG 40:6; [M+NH4]+@7.97	ME189922	1.11	0.87	0.78	1.18	0.93
TG 53:0; [M+NH4]+@11.15	ME189999	1.10	0.78	0.82	1.11	1.02
PE 40:6; [M+H]+@6.87	ME189956	0.98	0.82	0.85	1.15	1.03
TG 56:6; [M+NH4]+@10.54	ME190007	1.03	0.84	0.87	1.12	1.01
TG 48:2; [M+NH4]+@10.14	ME189985	0.32	0.43	0.28	2.60	0.60
TG 50:2; [M+NH4]+@10.37	ME189990	0.44	0.53	0.37	2.35	0.66
TG 52:3; [M+NH4]+@10.40	ME189996	0.31	0.51	0.46	2.47	0.62
TG 52:4; [M+NH4]+@10.21	ME189997	0.35	0.53	0.33	2.47	0.63
TG 50:3; [M+NH4]+@10.16	ME189991	0.14	0.29	0.14	3.17	0.37
TG 48:3; [M+NH4]+@9.89	ME189986	0.13	0.42	0.26	2.81	0.56
TG 50:4; [M+NH4]+@9.95	ME189992	0.14	0.43	0.14	2.87	0.53
TG 49:1; [M+NH4]+@10.45	ME189987	0.71	1.01	0.24	1.66	0.84
TG 48:1; [M+NH4]+@10.36	ME189984	0.63	0.70	0.63	1.73	0.88
TG 54:7; [M+NH4]+@10.04	ME190005	0.71	0.78	0.78	1.60	0.86
TG 54:3; [M+NH4]+@10.66	ME190001	0.54	0.62	0.56	2.16	0.66
TG 46:1; [M+NH4]+@10.12	ME189982	0.70	0.63	0.64	1.96	0.70
TG 52:2; [M+NH4]+@10.60	ME189995	0.70	0.64	0.51	2.07	0.65
TG 54:4; [M+NH4]+@10.45	ME190002	0.56	0.68	0.54	1.97	0.76
TG 54:5; [M+NH4]+@10.36	ME190003	0.57	0.62	0.69	1.90	0.81

Factors:

F1	CRE:Cone Cre \| SEX:f
F2	CRE:Cone Cre \| SEX:m
F3	CRE:negative \| SEX:f
F4	CRE:negative \| SEX:m
F5	CRE:Rod Cre \| SEX:f

Data matrix