Clustering data with hclust algorithm for (Study ST001720)

(Analysis AN002803)
MetaboliteStructureF1F2F3F4F5F6F7F8F9F10F11F12F13
4-Pyridoxic acidME4000160.070.0413.190.040.090.590.020.090.040.700.170.150.97
Salicylic acidME4001920.020.014.630.150.010.010.060.020.0217.400.010.031.10
5-acetyl-2,6-dimethyl-1,2,3,4-tetrahydropyridin-4-oneME4000180.240.220.250.360.261.020.850.240.2612.340.270.260.38
PyridoxineME4001880.040.041.270.180.700.920.350.030.1411.020.060.241.09
PhenolME4001820.640.283.830.300.330.350.450.020.6011.960.340.390.80
PseudoephedrineME4001860.110.084.340.130.180.670.100.090.109.180.090.750.50
CotinineME4000528.110.030.811.650.430.442.311.321.324.550.030.700.78
OxoamideME4001753.680.101.530.920.440.423.811.684.363.440.130.920.50
L-Cysteine-S-sulfateME4001310.441.251.400.680.930.850.825.841.090.700.191.300.83
ParaxanthineME4001800.280.550.861.011.051.180.764.380.401.210.400.800.85
3-PyridinolME4000101.850.610.410.502.351.030.719.760.571.460.130.570.66
D-(-)-Quinic acidME4000580.210.980.480.721.511.260.237.710.340.670.370.670.96
Taurochenodeoxycholic acidME4002020.970.340.206.140.270.440.340.040.091.550.200.250.81
3-Hydroxyanthranilic acidME4000021.730.243.370.610.471.150.440.730.573.680.260.450.85
Methyl indole-3-acetateME4001542.162.960.610.461.710.810.220.640.100.881.961.280.95
AdenosineME4000290.534.351.080.570.910.960.312.090.270.480.821.190.95
InosineME4001210.213.271.460.630.710.910.182.590.210.240.551.441.01
VanillinME4002100.894.420.580.690.541.260.500.641.070.750.420.681.39
CaffeineME4000440.062.470.370.351.181.360.170.860.060.771.191.080.81
DL-StachydrineME4000690.563.341.061.020.871.090.310.690.320.300.321.011.12
MethylcysteineME4001550.943.390.820.781.570.940.941.230.590.770.970.880.86
Pipecolic acidME4001830.523.430.480.831.071.040.921.070.230.741.470.920.97
TenofovirME4002030.170.160.140.150.152.390.140.160.160.160.130.560.75
3-Phosphoglyceric acidME4000092.331.221.081.090.770.991.380.122.151.961.770.590.87
Benzoic acidME4000412.111.730.961.131.370.941.760.401.981.051.510.710.41
(2R)-2,3-Dihydroxypropanoic acidME3999882.030.281.341.091.200.781.990.024.281.241.160.681.11
GlycylprolineME4000912.410.810.961.481.550.641.780.002.972.090.110.820.82
N-(2-hydroxyphenyl)acetamideME4001590.010.060.010.011.311.541.440.010.013.340.010.411.52
GuvacolineME4000930.430.660.990.301.080.940.460.830.352.410.301.580.84
EcgonineME4000800.470.440.900.690.700.860.900.531.014.250.491.180.91
Methylimidazoleacetic acidME4001560.830.170.911.020.511.080.550.160.254.120.540.900.94
4-HydroxyprolineME4000141.040.340.661.201.040.851.890.510.562.470.880.851.06
4-MethylphenolME4000150.400.600.781.040.790.841.030.390.063.140.731.200.97
N-PhenylacetylglutamineME4001690.780.360.810.750.850.911.510.220.133.300.411.190.79
3-Hydroxybutyric acidME4000030.240.710.800.920.431.124.150.430.500.600.610.640.89
2-Hydroxy-3-methylbutyric acidME3999980.771.280.621.400.840.673.590.620.570.620.570.991.01
2-Hydroxy-3-methylbutyric acid_2ME3999990.741.210.571.790.760.722.960.740.490.600.970.930.89
Adenosine monophosphateME4000300.700.761.080.561.490.893.470.170.272.050.580.561.06
ADPME4000320.980.581.940.711.710.952.170.140.612.330.340.381.05
D-MannoseME4000710.710.440.351.730.661.101.330.030.590.481.870.551.68
D-Ribono-1,4-lactoneME4000760.060.040.071.980.661.361.280.010.040.022.020.640.83
Shikimic acidME4001940.300.130.171.400.871.330.890.110.180.211.880.571.64
3-Furoic acidME4000010.160.100.121.630.801.221.060.090.170.112.340.591.66
Citric acidME4000500.170.110.131.710.851.231.090.090.180.122.070.561.60
Gluconic acidME4000840.340.210.301.440.711.311.350.180.250.381.700.601.34
Malonic acidME4001520.210.110.101.410.811.341.650.060.140.241.700.591.27
β-D-Glucopyranuronic acidME4002120.120.060.091.420.751.371.590.030.050.141.460.601.37
cis-Aconitic acidME4000470.630.410.381.210.801.190.850.170.660.523.450.611.44
Ascorbic acidME4000400.130.210.122.091.011.130.830.060.220.133.010.820.65
Sorbic acidME4001960.190.170.171.640.521.170.950.130.220.204.000.900.85
1-MethylnicotinamideME3999932.750.241.510.450.421.700.310.910.422.230.260.340.88
2,4-Dihydroxybenzoic acidME3999963.070.870.770.550.531.110.721.970.591.470.901.160.94
Adenosine triphosphateME4000311.691.002.100.922.690.780.970.181.191.471.600.390.87
D-FructoseME4000631.610.701.980.711.710.840.220.290.172.460.260.941.17
PiperineME4001840.130.500.112.230.581.060.630.270.441.190.351.100.78
Glycocholic acidME4000881.930.570.322.910.710.951.090.050.201.450.500.510.91
Glycoursodeoxycholic acidME4000900.610.670.482.400.640.991.090.040.182.100.790.590.94
Methionine sulfoxideME4001531.240.710.862.350.490.820.830.360.431.290.760.931.08
2-FuroylglycineME3999970.140.390.470.862.531.610.070.190.060.440.180.390.83
13,14-Dihydro-15-keto Prostaglandin A2ME3999910.360.460.300.871.821.420.260.810.460.660.500.800.81
Testosterone sulfateME4002040.260.270.790.771.361.160.691.390.280.310.381.220.97
16-Hydroxyhexadecanoic acidME3999920.602.790.980.700.960.961.451.702.360.541.140.890.94
DecanoylcarnitineME4000600.351.901.290.940.810.772.861.421.590.880.510.930.91
HexanoylcarnitineME4001130.601.461.160.850.880.861.961.791.700.910.850.980.98
Hippuric acidME4001140.370.552.880.840.810.790.411.710.371.010.691.291.00
Pantothenic acidME4001790.410.462.260.400.741.260.360.970.831.351.520.860.86
9-Methyluric acidME4000250.780.430.960.780.871.310.282.690.652.770.330.690.78
7-MethylxanthineME4000220.990.560.780.670.711.410.181.690.901.840.320.860.90
1,7-Dimethyluric acidME3999900.220.800.860.590.911.430.391.860.431.270.440.870.84
3-Methoxyphenylacetic acidME4000050.340.310.510.451.491.560.471.800.561.200.640.630.81
XanthineME4002111.032.041.030.731.030.921.102.481.320.790.831.090.90
HypoxanthineME4001160.221.791.470.811.030.850.652.031.200.640.711.330.88
Orotic acidME4001740.641.421.660.671.001.040.811.611.431.180.400.970.91
L-CystineME4001320.951.481.590.850.791.070.752.730.370.730.271.180.53
Heavy CystineME4000960.670.991.440.760.880.900.971.850.810.641.171.450.52
Heavy Aspartic AcidME4000950.551.151.210.890.891.000.881.940.580.401.531.360.42
Heavy SerineME4001050.520.971.150.890.910.980.971.820.670.461.461.370.46
Heavy N-Acetylaspartic acidME4001010.671.561.310.691.060.930.692.140.920.680.911.440.47
L-AsparagineME4001280.801.151.240.910.940.980.941.860.720.710.721.240.68
L-SerineME4001460.661.291.150.820.880.960.901.980.540.750.801.410.54
Aminoadipic acidME4000360.380.850.970.701.041.230.562.590.590.541.121.130.56
Glycerol 3-phosphateME4000850.351.341.270.630.850.990.512.240.430.211.021.750.25
Gamma-Aminobutyric acidME4000830.531.770.880.720.891.110.422.940.480.640.791.320.53
L-Aspartic acidME4001290.411.661.230.710.751.030.582.560.620.730.721.480.36
N2-MethylguanosineME4001601.051.251.510.821.280.831.123.241.910.710.251.100.83
Quinolinic acidME4001911.541.151.820.770.900.890.793.380.681.051.101.180.53
Capric acidME4000450.401.841.180.640.491.350.770.460.650.290.720.921.10
Dodecanoic acidME4000750.280.962.090.370.571.570.780.480.640.280.650.630.98
TrigonellineME4002060.511.080.711.311.111.270.180.980.311.580.850.611.00
3-MethylhistidineME4000070.980.140.771.020.731.230.460.150.161.200.491.121.08
Trimethylamine N-oxideME4002070.600.290.831.290.941.170.630.280.211.920.460.851.00
Argininosuccinic acidME4000390.540.491.451.820.630.921.050.590.330.500.991.020.92
JasmoneME4001231.200.520.821.470.640.880.980.310.710.880.550.961.87
L-AcetylcarnitineME4001240.950.961.330.891.010.991.441.092.051.270.840.860.83
Palmitoyl sphingomyelinME4001781.450.991.471.211.160.881.530.752.201.210.780.830.67
9-Oxo-10(E),12(E)-octadecadienoic acidME4000261.321.940.831.530.870.771.940.242.291.470.530.890.72
Stearidonic AcidME4001981.051.610.791.520.880.861.320.461.901.201.020.920.80
3-methylphenylacetic acidME4000080.520.630.451.000.881.020.730.510.430.711.661.370.93
2,2-Dimethylsuccinic acidME3999950.740.270.351.111.191.290.760.220.430.821.210.890.88
D-Ribose 5-phosphateME4000770.430.560.461.221.261.520.440.310.500.471.440.630.54
SarcosineME4001931.550.680.871.051.670.970.860.450.771.151.730.800.93
Ethylmalonic acidME4000820.770.970.541.270.881.071.570.260.521.481.310.731.02
D-GlucoseME4000641.120.660.671.311.011.081.130.700.721.101.480.770.97
Crotonic acidME4000560.670.610.551.481.121.081.040.460.620.961.670.711.06
Acrylic acidME4000280.830.710.611.261.031.141.130.540.721.101.590.681.01
Glyoxylic acidME4000920.850.610.611.321.011.101.020.470.661.191.540.711.14
D-Saccharic acidME4000780.480.640.471.010.721.331.370.121.140.661.050.671.24
Hydroxyisocaproic acidME4001150.761.030.591.191.000.892.080.701.000.720.811.011.01
Eicosapentaenoic AcidME4000810.260.710.910.831.390.920.860.752.270.781.591.120.96
Docosahexaenoic AcidME4000720.281.211.051.251.380.871.230.761.140.532.040.900.93
Pentadecanoic acidME4001810.401.421.170.640.721.180.791.801.280.401.451.020.90
Arachidonic acidME4000380.491.060.921.011.220.981.341.031.670.771.300.880.96
8,11,14-Eicosatrienoic acidME4000230.481.451.230.901.160.971.001.321.620.601.750.930.92
Oleic AcidME4001710.451.591.200.840.840.991.361.441.680.661.480.930.95
Myristic AcidME4001580.551.721.070.690.921.091.051.301.360.641.320.950.96
Palmitic AcidME4001770.631.901.140.891.010.991.341.321.460.661.200.831.03
Adrenic acidME4000330.521.810.791.051.021.031.441.391.480.701.460.790.85
Docosapentaenoic AcidME4000730.301.510.841.041.270.901.321.451.690.541.541.000.84
Deoxycholic acidME4000612.330.531.220.881.221.081.250.870.340.750.670.880.91
Glycolic acidME4000891.420.901.091.031.070.990.940.640.010.911.171.050.94
Nicotinamide 1-oxideME4001681.540.510.890.840.681.480.400.731.121.290.570.700.85
7-MethylguanineME4000212.481.250.990.970.840.981.101.291.291.440.880.920.88
5-Hydroxyindole-3-acetic acidME4000192.120.821.270.791.031.010.761.211.120.940.951.050.93
L-KynurenineME4001392.120.821.280.791.031.010.771.211.130.940.951.050.92
Glycerophospho-N-palmitoyl ethanolamineME4000861.931.680.970.761.220.940.941.030.970.971.420.970.99
Oxoglutaric acidME4001761.461.140.800.770.880.921.021.670.921.061.391.240.87
Indole-3-acetic acidME4001180.650.380.660.831.310.991.150.750.320.960.581.310.87
5,5-DimethylhydantoinME4000170.710.720.941.000.890.970.840.860.661.160.841.350.70
DL-α-Aminocaprylic acidME4000700.800.660.661.030.970.900.721.250.571.120.561.410.98
Citraconic AcidME4000480.950.900.860.921.241.120.921.270.521.180.540.890.96
N6,N6,N6-Trimethyl-L-lysineME4001610.910.530.930.951.151.011.051.020.731.560.570.990.98
PropionylcarnitineME4001850.590.870.710.850.881.160.571.041.061.381.031.010.98
D-(-)-MannitolME4000570.770.670.750.711.141.330.510.470.471.740.470.791.01
3-Indoxyl sulphateME4000040.810.740.970.890.811.160.720.390.701.470.831.000.94
4-HydroxyindoleME4000130.650.730.970.860.761.240.760.350.671.390.750.960.90
3-MethylcrotonylglycineME4000061.020.712.080.950.991.030.810.781.040.850.830.910.87
Diaminopimelic acidME4000651.220.791.820.780.950.951.030.710.901.160.781.050.97
Alpha-Linolenic acidME4000351.150.790.801.480.930.911.470.660.721.100.930.980.84
D-δ-TocopherolME4000791.041.020.891.430.990.971.450.720.970.880.820.880.85
CitralME4000491.360.730.851.640.750.990.940.810.900.900.890.861.10
L-MethionineME4001431.061.080.971.730.970.890.900.891.081.150.720.860.98
Dodecanedioic acidME4000740.891.171.070.700.691.230.940.560.690.990.680.980.95
N-Acetylglutamic acidME4001631.171.221.060.940.421.141.180.750.720.921.141.010.86
N-Acetyl-L-aspartic acidME4001651.121.151.580.740.740.870.991.680.910.810.721.500.57
CitrullineME4000511.060.971.170.720.780.991.181.430.851.071.211.210.74
GlycineME4000870.741.031.410.740.900.920.971.460.691.060.971.360.61
AllantoinME4000341.141.081.450.580.620.990.601.010.860.950.661.361.10
Pyroglutamic acidME4001891.140.971.100.740.681.020.871.091.190.840.491.370.85
Indole-3-pyruvic acidME4001200.690.861.200.721.091.030.771.350.720.630.751.230.91
L-Lactic acidME4001400.741.171.160.811.090.920.831.170.950.850.841.240.96
Myo-inositolME4001570.820.921.740.841.000.950.821.330.890.880.601.140.94
N-AcetylornithineME4001660.950.931.590.831.320.980.491.390.820.940.621.050.98
(1^S,2^S)-3^,11^-dihydroxy-1^,2^,5^-trimethyl-8^-oxaspiro[oxirane-2,12^-tricyclo[7.2.1.0�,⁷]dodecan]-5^-en-4^-oneME3999871.260.951.510.951.290.901.311.531.520.581.001.010.70
BilirubinME4000430.590.800.950.991.091.100.701.601.180.991.290.960.75
Heavy GlutamateME4000970.881.001.071.031.060.961.151.471.090.761.411.010.81
Imidazolelactic acidME4001170.940.781.100.691.231.011.151.521.230.631.001.100.85
L-ArginineME4001261.920.881.221.040.980.961.210.581.381.261.090.860.97
DL-4-Hydroxyphenyllactic acidME4000681.680.860.671.130.911.101.240.741.281.020.720.860.91
Succinic acidME4001991.490.821.130.890.871.061.470.851.030.850.910.811.17
BetaineME4000421.040.691.021.080.930.891.321.431.381.300.871.040.96
CholineME4000461.201.550.990.900.940.930.941.281.291.170.811.080.99
L-IsoleucineME4001381.041.361.080.860.831.100.771.070.881.180.771.010.87
TaurineME4002011.151.171.170.881.170.980.951.070.891.460.730.881.09
L-Ascorbic acid 2-sulfateME4001271.120.831.360.931.020.991.050.741.661.320.920.960.84
OleamideME4001701.281.051.380.991.160.921.081.011.521.410.790.890.91
PseudouridineME4001871.531.031.310.831.040.920.981.131.531.360.731.090.83
HexadecanamideME4001121.301.321.321.021.060.911.170.871.331.510.780.950.77
N6-Acetyl-L-lysineME4001621.081.101.430.940.980.891.061.121.181.590.740.990.97
N-Acetyl-L-alanineME4001641.280.991.421.020.990.950.961.051.211.360.820.940.92
D-Erythro-sphingosine 1-phosphateME4000621.161.261.240.931.131.031.061.300.970.740.540.940.94
UridineME4002090.931.091.230.931.341.030.841.251.350.750.800.940.85
Indole-3-lactic acidME4001191.440.840.890.840.971.100.910.850.930.790.851.100.90
Heavy Tyrosine_2ME4001091.171.151.161.011.150.921.061.211.631.121.130.970.84
L-HistidineME4001361.551.151.160.921.040.951.031.291.521.020.930.990.93
DimethylglycineME4000661.591.080.911.041.170.930.911.341.251.280.820.980.96
L-CarnitineME4001301.250.870.960.941.121.000.921.111.241.300.750.980.97
Symmetric dimethylarginineME4002001.200.931.150.850.980.960.971.331.291.430.771.040.96
1,5-Anhydro-D-glucitolME3999891.110.901.220.871.330.951.001.111.351.000.711.000.96
IsoquinolineME4001221.131.001.090.881.160.961.001.071.250.890.841.090.93
SkatoleME4001951.200.981.010.801.250.990.831.181.190.840.751.120.93
6-MethylquinolineME4000201.361.040.990.841.191.020.881.141.270.840.761.060.92
8-HydroxyquinolineME4000241.361.021.040.801.201.000.891.221.200.910.771.050.95
L-TryptophanME4001481.321.051.050.861.140.990.921.231.180.900.781.060.94
L-LeucineME4001411.201.121.060.911.021.010.841.120.931.040.951.020.99
L-LysineME4001421.041.081.110.881.061.040.881.231.220.970.800.970.99
trans-Cinnamic acidME4002051.161.241.100.940.991.020.861.061.171.050.861.010.92
L-PhenylalanineME4001441.201.201.090.990.980.980.981.101.241.050.951.010.92
L-ValineME4001501.191.131.061.001.080.961.031.131.271.040.831.000.94
1-Nitrosopiperidine (NPIP)ME3999941.231.001.000.860.861.021.001.281.380.990.781.080.94
OrnithineME4001731.291.000.990.880.871.020.991.311.191.000.781.090.94
Heavy Oxoglutaric acidME4001021.021.011.290.920.950.931.021.441.210.940.971.130.85
L-Glutamic acidME4001341.091.111.120.930.910.960.961.281.181.010.921.150.83
L-GlutamineME4001351.101.071.160.940.910.951.001.161.201.000.921.150.84
CreatineME4000541.190.821.130.901.090.991.241.210.940.861.000.990.95
Heavy TaurineME4001061.270.950.951.081.080.921.140.841.261.081.120.981.03
Heavy ThreonineME4001070.990.851.001.081.120.951.110.911.181.021.100.931.06
Heavy HistidineME4000981.250.951.161.041.010.941.231.071.370.911.070.980.93
Heavy PhenylalanineME4001031.200.941.071.021.060.941.211.031.290.941.051.030.89
Heavy LysineME4000991.250.861.051.001.110.941.151.001.360.970.991.020.94
Heavy MethionineME4001001.190.941.120.941.110.921.151.051.330.990.991.050.93
Heavy ProlineME4001041.181.021.081.051.130.921.250.991.330.970.940.990.91
Heavy ValineME4001101.160.871.111.031.130.891.280.941.400.960.971.040.92
Heavy XanthineME4001111.011.061.050.981.070.951.041.201.250.911.031.070.89
Heavy ArginineME4000940.990.900.990.961.080.941.141.211.340.851.011.100.91
Heavy TyrosineME4001081.010.941.070.961.070.941.161.101.310.950.961.060.93
AcetophenoneME4000271.441.071.121.030.861.020.980.901.151.070.890.990.88
4-HydroxybenzaldehydeME4000111.481.101.071.000.941.040.900.761.321.040.860.940.99
CoumarinME4000531.461.041.120.980.931.050.890.791.311.010.880.960.92
N-BenzylformamideME4001671.481.121.080.991.001.020.960.921.340.930.910.940.96
2-Hydroxycinnamic acidME4000001.471.101.040.961.021.011.020.791.371.020.920.950.95
L-TyrosineME4001491.471.111.040.961.021.011.020.791.371.020.920.950.95
Uric acidME4002081.500.921.121.011.160.921.031.001.061.290.791.020.89
CreatinineME4000551.010.790.951.011.050.990.980.910.911.290.771.030.97
Linoleic AcidME4001371.270.821.090.921.070.971.120.771.141.170.821.050.92
L-ThreonineME4001471.190.920.981.081.000.961.140.851.081.210.830.951.07
D-2-Hydroxyglutaric acidME4000590.760.810.901.130.781.171.210.930.470.611.170.990.68
Malic acidME4001511.180.860.761.090.811.011.171.030.780.601.221.091.02
4-Hydroxybutyric acid (GHB)ME4000120.690.770.840.911.011.051.000.970.890.661.121.150.90
L-ErgothioneineME4001330.751.020.871.000.801.070.880.790.830.591.261.110.98
Arachidic AcidME4000370.770.901.180.971.090.891.170.920.830.901.260.951.33
Stearic AcidME4001970.981.060.930.971.090.921.200.930.891.011.000.921.37
Pyruvic acidME4001900.750.830.930.911.241.030.900.581.060.821.441.020.94
DL-3-Aminoisobutyric acidME4000670.610.710.920.871.081.050.971.111.180.940.701.120.91
Oleoyl-L-α-lysophosphatidic acidME4001720.970.680.970.681.211.050.751.060.950.891.001.140.97
L-AlanineME4001250.931.000.980.931.140.980.920.911.290.981.161.030.97
L-ProlineME4001450.810.940.960.881.001.030.830.981.021.011.171.060.97

Factors:

F1Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:F | Race/ethnicity:Black
F2Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:F | Race/ethnicity:Hispanic
F3Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:F | Race/ethnicity:White
F4Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:M | Race/ethnicity:Black
F5Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:M | Race/ethnicity:Hispanic
F6Non controllers (NC=1) or post-treatment controller (PTC=2):1 | Gender:M | Race/ethnicity:White
F7Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:F | Race/ethnicity:Black
F8Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:F | Race/ethnicity:Hispanic
F9Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:F | Race/ethnicity:White
F10Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:M | Race/ethnicity:Black
F11Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:M | Race/ethnicity:Hispanic
F12Non controllers (NC=1) or post-treatment controller (PTC=2):2 | Gender:M | Race/ethnicity:White
F13Non controllers (NC=1) or post-treatment controller (PTC=2):NA | Gender:NA | Race/ethnicity:NA
Data matrix
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