Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST001811)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Raw file name:AA-CS1-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F2	Raw file name:AA-CS2-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F3	Raw file name:AA-CS3-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F4	Raw file name:AA-CS4-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F5	Raw file name:AA-CS5-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F6	Raw file name:AA-CS6-PRM \| SampleType:Amino acid standard \| Genotype:Standard
F7	Raw file name:GAT-GLN-1-neg-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F8	Raw file name:GAT-GLN-1-pos-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F9	Raw file name:GAT-GLN-2-neg-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F10	Raw file name:GAT-GLN-2-pos-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F11	Raw file name:GAT-GLN-3-neg-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F12	Raw file name:GAT-GLN-3-pos-PRM \| SampleType:Negative Control \| Genotype:gat1_2.1
F13	Raw file name:GATp10GLN-1-neg-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F14	Raw file name:GATp10GLN-1-pos-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F15	Raw file name:GATp10GLN-2-neg-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F16	Raw file name:GATp10GLN-2-pos-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F17	Raw file name:GATp10GLN-3-neg-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F18	Raw file name:GATp10GLN-3-pos-PRM \| SampleType:Long Gln treatment \| Genotype:gat1_2.1
F19	Raw file name:GATp2GLN-1-neg-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F20	Raw file name:GATp2GLN-1-pos-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F21	Raw file name:GATp2GLN-2-neg-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F22	Raw file name:GATp2GLN-2-pos-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F23	Raw file name:GATp2GLN-3-neg-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F24	Raw file name:GATp2GLN-3-pos-PRM \| SampleType:Short Gln treatment \| Genotype:gat1_2.1
F25	Raw file name:GATp2GLU-1-neg-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F26	Raw file name:GATp2GLU-1-pos-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F27	Raw file name:GATp2GLU-2-neg-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F28	Raw file name:GATp2GLU-2-pos-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F29	Raw file name:GATp2GLU-3-neg-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F30	Raw file name:GATp2GLU-3-pos-PRM \| SampleType:Positive Control \| Genotype:gat1_2.1
F31	Raw file name:OA-CS1-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F32	Raw file name:OA-CS2-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F33	Raw file name:OA-CS3-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F34	Raw file name:OA-CS4-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F35	Raw file name:OA-CS5-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F36	Raw file name:OA-CS6-PRM \| SampleType:Organic acid standard \| Genotype:Standard
F37	Raw file name:WT-GLN-1-neg-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F38	Raw file name:WT-GLN-1-pos-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F39	Raw file name:WT-GLN-2-neg-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F40	Raw file name:WT-GLN-2-pos-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F41	Raw file name:WT-GLN-3-neg-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F42	Raw file name:WT-GLN-3-pos-PRM \| SampleType:Negative Control \| Genotype:Wildtype
F43	Raw file name:WTp10GLN-1-neg-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F44	Raw file name:WTp10GLN-1-pos-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F45	Raw file name:WTp10GLN-2-neg-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F46	Raw file name:WTp10GLN-2-pos-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F47	Raw file name:WTp10GLN-3-neg-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F48	Raw file name:WTp10GLN-3-pos-PRM \| SampleType:Long Gln treatment \| Genotype:Wildtype
F49	Raw file name:WTp2GLN-1-neg-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F50	Raw file name:WTp2GLN-1-pos-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F51	Raw file name:WTp2GLN-2-neg-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F52	Raw file name:WTp2GLN-2-pos-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F53	Raw file name:WTp2GLN-3-neg-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F54	Raw file name:WTp2GLN-3-pos-PRM \| SampleType:Short Gln treatment \| Genotype:Wildtype
F55	Raw file name:WTp2GLU-1-neg-PRM \| SampleType:Positive Control \| Genotype:Wildtype
F56	Raw file name:WTp2GLU-1-pos-PRM \| SampleType:Positive Control \| Genotype:Wildtype
F57	Raw file name:WTp2GLU-2-neg-PRM \| SampleType:Positive Control \| Genotype:Wildtype
F58	Raw file name:WTp2GLU-2-pos-PRM \| SampleType:Positive Control \| Genotype:Wildtype
F59	Raw file name:WTp2GLU-3-neg-PRM \| SampleType:Positive Control \| Genotype:Wildtype
F60	Raw file name:WTp2GLU-3-pos-PRM \| SampleType:Positive Control \| Genotype:Wildtype

Data matrix