Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST001919)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Cohort:2 \| Mouse:10 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Rt \| Treatment:PFOA
F2	Cohort:2 \| Mouse:11 \| Sex:Male \| Genotype:KO \| Ear Mark:1x Lt \| Treatment:Vh
F3	Cohort:2 \| Mouse:12 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:None \| Treatment:Vh
F4	Cohort:2 \| Mouse:13 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:PFOA
F5	Cohort:2 \| Mouse:8 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Lt \| Treatment:Vh
F6	Cohort:2 \| Mouse:9 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:None \| Treatment:PFOA
F7	Cohort:3 \| Mouse:14 \| Sex:Male \| Genotype:KO \| Ear Mark:None \| Treatment:Vh
F8	Cohort:3 \| Mouse:15 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:Vh
F9	Cohort:3 \| Mouse:16 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:None \| Treatment:Vh
F10	Cohort:3 \| Mouse:17 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Rt \| Treatment:Vh
F11	Cohort:3 \| Mouse:18 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Lt \| Treatment:Vh
F12	Cohort:3 \| Mouse:19 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Bt \| Treatment:Vh
F13	Cohort:4 \| Mouse:20 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:PFOA
F14	Cohort:4 \| Mouse:21 \| Sex:Male \| Genotype:KO \| Ear Mark:2x Rt \| Treatment:PFOA
F15	Cohort:4 \| Mouse:22 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Lt \| Treatment:PFOA
F16	Cohort:5 \| Mouse:23 \| Sex:Female \| Genotype:KO \| Ear Mark:None \| Treatment:PFOA
F17	Cohort:5 \| Mouse:24 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Rt \| Treatment:PFOA
F18	Cohort:5 \| Mouse:25 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Lt \| Treatment:PFOA
F19	Cohort:5 \| Mouse:26 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Bt \| Treatment:PFOA
F20	Cohort:5 \| Mouse:27 \| Sex:Male \| Genotype:KO \| Ear Mark:None \| Treatment:PFOA
F21	Cohort:5 \| Mouse:28 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:PFOA
F22	Cohort:5 \| Mouse:29 \| Sex:Male \| Genotype:KO \| Ear Mark:1x Lt \| Treatment:PFOA
F23	Cohort:6 \| Mouse:30 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:Vh
F24	Cohort:6 \| Mouse:31 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Lt \| Treatment:Vh
F25	Cohort:6 \| Mouse:32 \| Sex:Male \| Genotype:KO \| Ear Mark:1x Bt \| Treatment:Vh
F26	Cohort:6 \| Mouse:33 \| Sex:Female \| Genotype:KO \| Ear Mark:None \| Treatment:Vh
F27	Cohort:6 \| Mouse:34 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Rt \| Treatment:Vh
F28	Cohort:6 \| Mouse:35 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Lt \| Treatment:Vh
F29	Cohort:6 \| Mouse:36 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Bt \| Treatment:Vh
F30	Cohort:6 \| Mouse:37 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:None \| Treatment:PFOA
F31	Cohort:7 \| Mouse:38 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:None \| Treatment:Vh
F32	Cohort:7 \| Mouse:39 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:Vh
F33	Cohort:7 \| Mouse:40 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:1x Lt \| Treatment:Vh
F34	Cohort:7 \| Mouse:41 \| Sex:Male \| Genotype:KO \| Ear Mark:1x Bt \| Treatment:Vh
F35	Cohort:7 \| Mouse:42 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:None \| Treatment:PFOA
F36	Cohort:8 \| Mouse:43 \| Sex:Male \| Genotype:hPPARa \| Ear Mark:None \| Treatment:PFOA
F37	Cohort:8 \| Mouse:44 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Lt \| Treatment:PFOA
F38	Cohort:8 \| Mouse:45 \| Sex:Female \| Genotype:KO \| Ear Mark:1x Bt \| Treatment:PFOA
F39	Cohort:8 \| Mouse:46 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:2x Rt \| Treatment:PFOA
F40	Cohort:8 \| Mouse:47 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:None \| Treatment:Vh
F41	Cohort:8 \| Mouse:48 \| Sex:Female \| Genotype:hPPARa \| Ear Mark:1x Rt \| Treatment:Vh

Data matrix