Clustering data with heatmap algorithm for (Study ST002117)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Cage:1 | Microbiota:26-member | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F2Cage:1 | Microbiota:26-member | Diet:NAD-precursor sufficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F3Cage:1 | Microbiota:BthetaBxylan | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F4Cage:1 | Microbiota:Btheta | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F5Cage:1 | Microbiota:Bxylan | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F6Cage:1 | Microbiota:Germfree | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F7Cage:1 | Microbiota:Germfree | Diet:NAD-precursor sufficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F8Cage:2 | Microbiota:26-member | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F9Cage:2 | Microbiota:26-member | Diet:NAD-precursor sufficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F10Cage:2 | Microbiota:BthetaBxylan | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F11Cage:2 | Microbiota:Btheta | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F12Cage:2 | Microbiota:Bxylan | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F13Cage:2 | Microbiota:Germfree | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F14Cage:2 | Microbiota:Germfree | Diet:NAD-precursor sufficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F15Cage:3 | Microbiota:26-member | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F16Cage:3 | Microbiota:Btheta | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F17Cage:3 | Microbiota:Bxylan | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F18Cage:3 | Microbiota:Germfree | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F19Cage:3 | Microbiota:Germfree | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F20Cage:4 | Microbiota:26-member | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F21Cage:4 | Microbiota:Btheta | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F22Cage:4 | Microbiota:Bxylan | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F23Cage:4 | Microbiota:Germfree | Diet:NAD-precursor deficient | Age (months):NA | WLZ:NA | Health phenotype:NA
F24Cage:4 | Microbiota:Germfree | Diet:NA-supplementeded | Age (months):NA | WLZ:NA | Health phenotype:NA
F25Cage:NA | Microbiota:NA | Diet:NA | Age (months):10.3 | WLZ:-2.7 | Health phenotype:Malnourished
F26Cage:NA | Microbiota:NA | Diet:NA | Age (months):10.4 | WLZ:-3.8 | Health phenotype:Malnourished
F27Cage:NA | Microbiota:NA | Diet:NA | Age (months):10.6 | WLZ:-2.81 | Health phenotype:Malnourished
F28Cage:NA | Microbiota:NA | Diet:NA | Age (months):11 | WLZ:-0.82 | Health phenotype:Healthy
F29Cage:NA | Microbiota:NA | Diet:NA | Age (months):12.5 | WLZ:-3.48 | Health phenotype:Malnourished
F30Cage:NA | Microbiota:NA | Diet:NA | Age (months):12 | WLZ:0.2 | Health phenotype:Healthy
F31Cage:NA | Microbiota:NA | Diet:NA | Age (months):13.3 | WLZ:-3.16 | Health phenotype:Malnourished
F32Cage:NA | Microbiota:NA | Diet:NA | Age (months):13.9 | WLZ:-2.17 | Health phenotype:Malnourished
F33Cage:NA | Microbiota:NA | Diet:NA | Age (months):13 | WLZ:-0.3 | Health phenotype:Healthy
F34Cage:NA | Microbiota:NA | Diet:NA | Age (months):13 | WLZ:-0.93 | Health phenotype:Healthy
F35Cage:NA | Microbiota:NA | Diet:NA | Age (months):14.1 | WLZ:-3.01 | Health phenotype:Malnourished
F36Cage:NA | Microbiota:NA | Diet:NA | Age (months):15 | WLZ:0.6 | Health phenotype:Healthy
F37Cage:NA | Microbiota:NA | Diet:NA | Age (months):16.2 | WLZ:-3.5 | Health phenotype:Malnourished
F38Cage:NA | Microbiota:NA | Diet:NA | Age (months):21.9 | WLZ:-2.03 | Health phenotype:Malnourished
F39Cage:NA | Microbiota:NA | Diet:NA | Age (months):25 | WLZ:1.7 | Health phenotype:Healthy
F40Cage:NA | Microbiota:NA | Diet:NA | Age (months):28 | WLZ:- | Health phenotype:Healthy
F41Cage:NA | Microbiota:NA | Diet:NA | Age (months):30 | WLZ:1.77 | Health phenotype:Healthy
F42Cage:NA | Microbiota:NA | Diet:NA | Age (months):6 | WLZ:1.58 | Health phenotype:Healthy
F43Cage:NA | Microbiota:NA | Diet:NA | Age (months):8 | WLZ:-0.43 | Health phenotype:Healthy
F44Cage:NA | Microbiota:NA | Diet:NA | Age (months):9.9 | WLZ:-5.54 | Health phenotype:Malnourished
Data matrix
  logo