Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST002453)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Brain Region:Cerebral Nuclei \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F2	Brain Region:Cerebral Nuclei \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F3	Brain Region:Cerebral Nuclei \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F4	Brain Region:Cerebral Nuclei \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F5	Brain Region:Cerebral Nuclei \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F6	Brain Region:Cerebral Nuclei \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F7	Brain Region:Cortical Subplate \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F8	Brain Region:Cortical Subplate \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F9	Brain Region:Cortical Subplate \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F10	Brain Region:Cortical Subplate \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F11	Brain Region:Cortical Subplate \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F12	Brain Region:Cortical Subplate \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F13	Brain Region:Fiber Tracts \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F14	Brain Region:Fiber Tracts \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F15	Brain Region:Fiber Tracts \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F16	Brain Region:Fiber Tracts \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F17	Brain Region:Fiber Tracts \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F18	Brain Region:Fiber Tracts \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F19	Brain Region:Hippocampus \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F20	Brain Region:Hippocampus \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F21	Brain Region:Hippocampus \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F22	Brain Region:Hippocampus \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F23	Brain Region:Hippocampus \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F24	Brain Region:Hippocampus \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F25	Brain Region:Hypothalamus \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F26	Brain Region:Hypothalamus \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F27	Brain Region:Hypothalamus \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F28	Brain Region:Hypothalamus \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F29	Brain Region:Hypothalamus \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F30	Brain Region:Hypothalamus \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F31	Brain Region:Iso Cortex \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F32	Brain Region:Iso Cortex \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F33	Brain Region:Iso Cortex \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F34	Brain Region:Iso Cortex \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F35	Brain Region:Iso Cortex \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F36	Brain Region:Iso Cortex \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F37	Brain Region:Olfact. Area \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F38	Brain Region:Olfact. Area \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F39	Brain Region:Olfact. Area \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F40	Brain Region:Olfact. Area \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F41	Brain Region:Olfact. Area \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F42	Brain Region:Olfact. Area \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F43	Brain Region:Thalamus \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F44	Brain Region:Thalamus \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F45	Brain Region:Thalamus \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F46	Brain Region:Thalamus \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F47	Brain Region:Thalamus \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F48	Brain Region:Thalamus \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months
F49	Brain Region:TOTAL \| Group:E3_FAD \| APOE genotype:E3/E3 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F50	Brain Region:TOTAL \| Group:E3_old \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:24 months
F51	Brain Region:TOTAL \| Group:E3_young \| APOE genotype:E3/E3 \| 5XFAD Genotype:Wild-type \| Age:3 months
F52	Brain Region:TOTAL \| Group:E4_FAD \| APOE genotype:E4/E4 \| 5XFAD Genotype:Hemizygous \| Age:12 months
F53	Brain Region:TOTAL \| Group:E4_old \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:24 months
F54	Brain Region:TOTAL \| Group:E4_young \| APOE genotype:E4/E4 \| 5XFAD Genotype:Wild-type \| Age:3 months

Data matrix