Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003315)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F2	Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F3	Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F4	Histology :Ductal \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F5	Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F6	Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F7	Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F8	Histology :Ductal \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F9	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F10	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F11	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F12	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F13	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F14	Histology :Ductal \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F15	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F16	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F17	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F18	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F19	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F20	Histology :Ductal \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F21	Histology :Lobular \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F22	Histology :Lobular \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F23	Histology :Lobular \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F24	Histology :Lobular \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F25	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Fulvestrant
F26	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Fulvestrant
F27	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F28	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F29	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F30	Histology :Lobular \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F31	Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F32	Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination
F33	Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F34	Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :Baseline \| Arm :Fulvestrant
F35	Histology :Lobular \| Lab Ki67 Group :not available \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Fulvestrant
F36	Histology :not available \| Lab Ki67 Group :not available \| PEPI Score :not available \| Visit :Baseline \| Arm :not enrolled, baseline only
F37	Histology :Other \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F38	Histology :Other \| Lab Ki67 Group :High BL, High W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F39	Histology :Other \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :Baseline \| Arm :Combination
F40	Histology :Other \| Lab Ki67 Group :High BL, Low W5 \| PEPI Score :>0 \| Visit :C4D1 \| Arm :Combination
F41	Histology :Other \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :Baseline \| Arm :Combination
F42	Histology :Other \| Lab Ki67 Group :Low BL, Low W5 \| PEPI Score :0 \| Visit :C4D1 \| Arm :Combination

Data matrix