Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003799)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Species:Clostridium bolteae \| Media:CHG \| Replicate:R1
F2	Species:Clostridium bolteae \| Media:CHG \| Replicate:R2
F3	Species:Clostridium bolteae \| Media:CHG \| Replicate:R3
F4	Species:Clostridium bolteae \| Media:Gifu \| Replicate:R1
F5	Species:Clostridium bolteae \| Media:Gifu \| Replicate:R2
F6	Species:Clostridium bolteae \| Media:Gifu \| Replicate:R3
F7	Species:Clostridium bolteae \| Media:Mega \| Replicate:R1
F8	Species:Clostridium bolteae \| Media:Mega \| Replicate:R2
F9	Species:Clostridium bolteae \| Media:Mega \| Replicate:R3
F10	Species:Clostridium clostridioforme \| Media:CHG \| Replicate:R1
F11	Species:Clostridium clostridioforme \| Media:CHG \| Replicate:R2
F12	Species:Clostridium clostridioforme \| Media:CHG \| Replicate:R3
F13	Species:Clostridium clostridioforme \| Media:Gifu \| Replicate:R1
F14	Species:Clostridium clostridioforme \| Media:Gifu \| Replicate:R2
F15	Species:Clostridium clostridioforme \| Media:Gifu \| Replicate:R3
F16	Species:Clostridium clostridioforme \| Media:Mega \| Replicate:R1
F17	Species:Clostridium clostridioforme \| Media:Mega \| Replicate:R2
F18	Species:Clostridium clostridioforme \| Media:Mega \| Replicate:R3
F19	Species:Clostridium innocuum \| Media:CHG \| Replicate:R1
F20	Species:Clostridium innocuum \| Media:CHG \| Replicate:R2
F21	Species:Clostridium innocuum \| Media:CHG \| Replicate:R3
F22	Species:Clostridium innocuum \| Media:Mega \| Replicate:R1
F23	Species:Clostridium innocuum \| Media:Mega \| Replicate:R2
F24	Species:Clostridium innocuum \| Media:Mega \| Replicate:R3
F25	Species:Clostridium symbiosum \| Media:CHG \| Replicate:R1
F26	Species:Clostridium symbiosum \| Media:CHG \| Replicate:R2
F27	Species:Clostridium symbiosum \| Media:CHG \| Replicate:R3
F28	Species:Clostridium symbiosum \| Media:Gifu \| Replicate:R1
F29	Species:Clostridium symbiosum \| Media:Gifu \| Replicate:R2
F30	Species:Clostridium symbiosum \| Media:Gifu \| Replicate:R3
F31	Species:Clostridium symbiosum \| Media:Mega \| Replicate:R1
F32	Species:Clostridium symbiosum \| Media:Mega \| Replicate:R2
F33	Species:Clostridium symbiosum \| Media:Mega \| Replicate:R3
F34	Species:Dorea longicatena \| Media:CHG \| Replicate:R1
F35	Species:Dorea longicatena \| Media:CHG \| Replicate:R2
F36	Species:Dorea longicatena \| Media:CHG \| Replicate:R3
F37	Species:Dorea longicatena \| Media:Gifu \| Replicate:R1
F38	Species:Dorea longicatena \| Media:Gifu \| Replicate:R2
F39	Species:Dorea longicatena \| Media:Gifu \| Replicate:R3
F40	Species:Dorea longicatena \| Media:Mega \| Replicate:R1
F41	Species:Dorea longicatena \| Media:Mega \| Replicate:R2
F42	Species:Dorea longicatena \| Media:Mega \| Replicate:R3
F43	Species:Flavonifractor plautii \| Media:CHG \| Replicate:R1
F44	Species:Flavonifractor plautii \| Media:CHG \| Replicate:R2
F45	Species:Flavonifractor plautii \| Media:CHG \| Replicate:R3
F46	Species:Flavonifractor plautii \| Media:Gifu \| Replicate:R1
F47	Species:Flavonifractor plautii \| Media:Gifu \| Replicate:R2
F48	Species:Flavonifractor plautii \| Media:Gifu \| Replicate:R3
F49	Species:Flavonifractor plautii \| Media:Mega \| Replicate:R1
F50	Species:Flavonifractor plautii \| Media:Mega \| Replicate:R2
F51	Species:Flavonifractor plautii \| Media:Mega \| Replicate:R3
F52	Species:- \| Media:- \| Replicate:-
F53	Species:None \| Media:Media control CHG \| Replicate:CHG
F54	Species:None \| Media:Media control Gifu \| Replicate:Gifu
F55	Species:None \| Media:Media control Mega \| Replicate:Mega
F56	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R1
F57	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R2
F58	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R3
F59	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R1
F60	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R2
F61	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R3
F62	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R1
F63	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R2
F64	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R3
F65	Species:Turicibacter sanguinis \| Media:CHG \| Replicate:R1
F66	Species:Turicibacter sanguinis \| Media:CHG \| Replicate:R2
F67	Species:Turicibacter sanguinis \| Media:CHG \| Replicate:R3
F68	Species:Turicibacter sanguinis \| Media:Gifu \| Replicate:R1
F69	Species:Turicibacter sanguinis \| Media:Gifu \| Replicate:R2
F70	Species:Turicibacter sanguinis \| Media:Gifu \| Replicate:R3
F71	Species:Turicibacter sanguinis \| Media:Mega \| Replicate:R1
F72	Species:Turicibacter sanguinis \| Media:Mega \| Replicate:R2
F73	Species:Turicibacter sanguinis \| Media:Mega \| Replicate:R3

Data matrix