Clustering data with heatmap algorithm for (Study ST004033)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Sample source:blood | Diagnosis:Anti-synthetase syndrome | Fibrosis_present:No | ILD_group:NF_ILD
F2Sample source:blood | Diagnosis:Anti-synthetase syndrome | Fibrosis_present:Yes | ILD_group:F_ILD
F3Sample source:blood | Diagnosis:Bronchiectasis | Fibrosis_present:Yes | ILD_group:F_ILD
F4Sample source:blood | Diagnosis:CPFE | Fibrosis_present:Yes | ILD_group:F_ILD
F5Sample source:blood | Diagnosis:CTD related ILD | Fibrosis_present:No | ILD_group:NF_ILD
F6Sample source:blood | Diagnosis:CTD related ILD | Fibrosis_present:Yes | ILD_group:F_ILD
F7Sample source:blood | Diagnosis:Cystic Lung Disease | Fibrosis_present:No | ILD_group:NF_ILD
F8Sample source:blood | Diagnosis:Hypersensitivity Pneumonitis | Fibrosis_present:Yes | ILD_group:F_ILD
F9Sample source:blood | Diagnosis:Idiopathic Pulmonary Fibrosis (IPF) | Fibrosis_present:Yes | ILD_group:IPF
F10Sample source:blood | Diagnosis:Interstitial Pneumonia w/ Autoimmune Features (IPAF) | Fibrosis_present:Yes | ILD_group:F_ILD
F11Sample source:blood | Diagnosis:Myositis Associated ILD | Fibrosis_present:Yes | ILD_group:F_ILD
F12Sample source:blood | Diagnosis:NA | Fibrosis_present:NA | ILD_group:NA
F13Sample source:blood | Diagnosis:Non ILD Diagnosis | Fibrosis_present:No | ILD_group:non_ILD
F14Sample source:blood | Diagnosis:Sarcoidosis | Fibrosis_present:No | ILD_group:NF_ILD
F15Sample source:blood | Diagnosis:Sarcoidosis | Fibrosis_present:Yes | ILD_group:F_ILD
Data matrix
  logo