Clustering data with heatmap algorithm for A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection (Study ST000083)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:1
F2	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:-1
F3	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:10
F4	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:14
F5	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:21
F6	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:28
F7	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:3
F8	Infection:Control | Experimental Group:Control Group 1 | Harvest Day:6
F9	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:1
F10	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:-1
F11	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:10
F12	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:14
F13	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:21
F14	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:28
F15	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:3
F16	Infection:Control | Experimental Group:Control Group 2 | Harvest Day:6
F17	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:1
F18	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:-1
F19	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:10
F20	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:14
F21	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:21
F22	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:28
F23	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:3
F24	Infection:Infected | Experimental Group:Experimental 1 | Harvest Day:6
F25	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:1
F26	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:-1
F27	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:10
F28	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:14
F29	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:3
F30	Infection:Infected | Experimental Group:Experimental 2 | Harvest Day:6

Data matrix