Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for CHOICE clinical weight loss study (Study ST000661)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:1 Month \| Treatment:Ornish \| Type:Clinical
F2	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:1 Month \| Treatment:Southbeach \| Type:Clinical
F3	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:6 Months \| Treatment:Ornish \| Type:Clinical
F4	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:6 Months \| Treatment:Southbeach \| Type:Clinical
F5	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:Baseline \| Treatment:Ornish \| Type:Clinical
F6	Sample type:Plasma \| Sample_Source:Plasma \| Species:Homo sapiens \| Study:CHOICE \| Time_Point:Baseline \| Treatment:Southbeach \| Type:Clinical
F7	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:0 Days \| Treatment:Baseline \| Type:Preclinical
F8	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:27 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F9	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:27 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F10	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:29 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F11	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:29 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F12	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:34 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F13	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:34 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F14	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:36 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F15	Sample type:Plasma \| Sample_Source:Plasma \| Species:Rattus \| Study:CSU-143 \| Time_Point:36 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F16	Sample type:Plasma \| Sample_Source:POOLED \| Species:Homo sapiens \| Study:POOLED \| Time_Point:POOLED \| Treatment:POOLED \| Type:POOLED
F17	Sample type:Plasma \| Sample_Source:POOLED \| Species:Rattus \| Study:POOLED \| Time_Point:POOLED \| Treatment:POOLED \| Type:POOLED
F18	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:0 Days \| Treatment:Baseline \| Type:Preclinical
F19	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:27 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F20	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:27 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F21	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:29 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F22	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:29 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F23	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:34 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F24	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:34 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F25	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:36 Days \| Treatment:Gainer (ad lib) \| Type:Preclinical
F26	Sample type:Tissues \| Sample_Source:Mammary gland \| Species:Rattus \| Study:CSU-143 \| Time_Point:36 Days \| Treatment:Loser (40% DER) \| Type:Preclinical
F27	Sample type:Tissues \| Sample_Source:POOLED \| Species:Rattus \| Study:POOLED \| Time_Point:POOLED \| Treatment:POOLED \| Type:POOLED

Data matrix