Clustering data with heatmap algorithm for (Study ST001142)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Classifications:AML | Cell Culture Media:AMEM + 20% FBS
F2Classifications:AML | Cell Culture Media:IMDM + 10% FBS
F3Classifications:AML | Cell Culture Media:IMDM + 20% FBS
F4Classifications:AML | Cell Culture Media:IMDM + 5% FBS
F5Classifications:AML | Cell Culture Media:MEM + 10% FBS
F6Classifications:AML | Cell Culture Media:RPMI 1640 + 10% FBS
F7Classifications:AML | Cell Culture Media:RPMI 1640 + 15% FBS
F8Classifications:AML | Cell Culture Media:RPMI 1640 + 20% FBS
F9Classifications:B-cell_ALL | Cell Culture Media:IMDM + 10% FBS
F10Classifications:B-cell_ALL | Cell Culture Media:IMDM + 20% FBS
F11Classifications:B-cell_ALL | Cell Culture Media:RPMI 1640 + 10% FBS
F12Classifications:B-cell_ALL | Cell Culture Media:RPMI 1640 + 20% FBS
F13Classifications:B-cell_lymphoma_other | Cell Culture Media:DMEM + 10% FBS
F14Classifications:B-cell_lymphoma_other | Cell Culture Media:DMEM + 20% FBS
F15Classifications:B-cell_lymphoma_other | Cell Culture Media:IMDM + 10% FBS
F16Classifications:B-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 10% FBS
F17Classifications:B-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 15% FBS
F18Classifications:B-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 20% FBS
F19Classifications:bile_duct | Cell Culture Media:RPMI 1640 + 10% FBS
F20Classifications:breast | Cell Culture Media:DMEM + 10% FBS
F21Classifications:breast | Cell Culture Media:DMEM + 20% FBS
F22Classifications:breast | Cell Culture Media:EMEM + 10% FBS
F23Classifications:breast | Cell Culture Media:Leibovitzs L-15 + 10% FBS
F24Classifications:breast | Cell Culture Media:Leibovitzs L-15 + 20% FBS
F25Classifications:breast | Cell Culture Media:McCoys 5A + 10% FBS
F26Classifications:breast | Cell Culture Media:RPMI 1640 + 10% FBS
F27Classifications:breast | Cell Culture Media:RPMI 1640 + 15% FBS
F28Classifications:breast | Cell Culture Media:RPMI 1640 + 20% FBS
F29Classifications:chondrosarcoma | Cell Culture Media:DMEM + 10% FBS
F30Classifications:chondrosarcoma | Cell Culture Media:RPMI 1640 + 10% FBS
F31Classifications:chondrosarcoma | Cell Culture Media:RPMI 1640 + 20% FBS
F32Classifications:CML | Cell Culture Media:RPMI 1640 + 10% FBS
F33Classifications:CML | Cell Culture Media:RPMI 1640 + 20% FBS
F34Classifications:colorectal | Cell Culture Media:DMEM + 10% FBS
F35Classifications:colorectal | Cell Culture Media:DMEM + 15% FBS
F36Classifications:colorectal | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F37Classifications:colorectal | Cell Culture Media:DMEM;F12 = 1;1 + 20% FBS
F38Classifications:colorectal | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F39Classifications:colorectal | Cell Culture Media:EMEM + 10% FBS
F40Classifications:colorectal | Cell Culture Media:EMEM + 20% FBS
F41Classifications:colorectal | Cell Culture Media:F12K + 10% FBS
F42Classifications:colorectal | Cell Culture Media:Leibovitzs L-15 + 10% FBS
F43Classifications:colorectal | Cell Culture Media:McCoys 5A + 10% FBS
F44Classifications:colorectal | Cell Culture Media:RPMI 1640 + 10% FBS
F45Classifications:colorectal | Cell Culture Media:RPMI;F12 = 1;1 + 10% FBS
F46Classifications:endometrium | Cell Culture Media:DMEM + 20% FBS
F47Classifications:endometrium | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F48Classifications:endometrium | Cell Culture Media:DMEM;F12 = 1;1 + 15% FBS
F49Classifications:endometrium | Cell Culture Media:EMEM + 10% FBS
F50Classifications:endometrium | Cell Culture Media:EMEM + 15% FBS
F51Classifications:endometrium | Cell Culture Media:F12 + 20% FBS
F52Classifications:endometrium | Cell Culture Media:McCoys 5A + 10% FBS
F53Classifications:endometrium | Cell Culture Media:MEM + 10% FBS
F54Classifications:endometrium | Cell Culture Media:RPMI 1640 + 10% FBS
F55Classifications:endometrium | Cell Culture Media:RPMI 1640 + 20% FBS
F56Classifications:endometrium | Cell Culture Media:RPMI;MEM = 1;1 + 20% FBS
F57Classifications:esophagus | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F58Classifications:esophagus | Cell Culture Media:F12 + 20% FBS
F59Classifications:esophagus | Cell Culture Media:RPMI 1640 + 10% FBS
F60Classifications:esophagus | Cell Culture Media:RPMI;F12 = 1;1 + 10% FBS
F61Classifications:esophagus | Cell Culture Media:RPMI;F12 = 1;1 + 5% FBS
F62Classifications:Ewings_sarcoma | Cell Culture Media:DMEM + 10% FBS
F63Classifications:Ewings_sarcoma | Cell Culture Media:EMEM + 10% FBS
F64Classifications:Ewings_sarcoma | Cell Culture Media:IMDM + 10% FBS
F65Classifications:Ewings_sarcoma | Cell Culture Media:McCoys 5A + 15% FBS
F66Classifications:Ewings_sarcoma | Cell Culture Media:RPMI 1640 + 10% FBS
F67Classifications:Ewings_sarcoma | Cell Culture Media:RPMI 1640 + 15% FBS
F68Classifications:giant_cell_tumour | Cell Culture Media:DMEM + 10% FBS
F69Classifications:glioma | Cell Culture Media:DMEM + 10% FBS
F70Classifications:glioma | Cell Culture Media:DMEM + 15% FBS
F71Classifications:glioma | Cell Culture Media:DMEM + 20% FBS
F72Classifications:glioma | Cell Culture Media:DMEM + 5% FBS
F73Classifications:glioma | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F74Classifications:glioma | Cell Culture Media:EMEM + 10% FBS
F75Classifications:glioma | Cell Culture Media:EMEM + 20% FBS
F76Classifications:glioma | Cell Culture Media:EMEM + 5% FBS
F77Classifications:glioma | Cell Culture Media:MEM + 10% FBS
F78Classifications:glioma | Cell Culture Media:RPMI 1640 + 10% FBS
F79Classifications:glioma | Cell Culture Media:RPMI 1640 + 5% FBS
F80Classifications:glioma | Cell Culture Media:RPMI;EMEM = 1;1 + 20% FBS
F81Classifications:kidney | Cell Culture Media:DMEM + 10% FBS
F82Classifications:kidney | Cell Culture Media:DMEM + 15% FBS
F83Classifications:kidney | Cell Culture Media:EMEM + 10% FBS
F84Classifications:kidney | Cell Culture Media:McCoys 5A + 10% FBS
F85Classifications:kidney | Cell Culture Media:MEM + 10% FBS
F86Classifications:kidney | Cell Culture Media:RPMI 1640 + 10% FBS
F87Classifications:kidney | Cell Culture Media:RPMI 1640 + 5% FBS
F88Classifications:leukemia_other | Cell Culture Media:RPMI 1640 + 10% FBS
F89Classifications:leukemia_other | Cell Culture Media:RPMI 1640 + 15% FBS
F90Classifications:liver | Cell Culture Media:DMEM + 10% FBS
F91Classifications:liver | Cell Culture Media:DMEM + 5% FBS
F92Classifications:liver | Cell Culture Media:EMEM + 10% FBS
F93Classifications:liver | Cell Culture Media:RPMI 1640 + 10% FBS
F94Classifications:liver | Cell Culture Media:Williams E Medium + 10% FBS
F95Classifications:lung_NSC | Cell Culture Media:DMEM + 10% FBS
F96Classifications:lung_NSC | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F97Classifications:lung_NSC | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F98Classifications:lung_NSC | Cell Culture Media:EMEM + 10% FBS
F99Classifications:lung_NSC | Cell Culture Media:EMEM + 20% FBS
F100Classifications:lung_NSC | Cell Culture Media:F10 + 10% FBS
F101Classifications:lung_NSC | Cell Culture Media:F12 + 10% FBS
F102Classifications:lung_NSC | Cell Culture Media:Leibovitzs L-15 + 10% FBS
F103Classifications:lung_NSC | Cell Culture Media:McCoys 5A + 10% FBS
F104Classifications:lung_NSC | Cell Culture Media:MEM + 10% FBS
F105Classifications:lung_NSC | Cell Culture Media:RPMI 1640 + 10% FBS
F106Classifications:lung_NSC | Cell Culture Media:RPMI 1640 + 20% FBS
F107Classifications:lung_NSC | Cell Culture Media:RPMI 1640 + 5% FBS
F108Classifications:lung_small_cell | Cell Culture Media:DMEM + 10% FBS
F109Classifications:lung_small_cell | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F110Classifications:lung_small_cell | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F111Classifications:lung_small_cell | Cell Culture Media:EMEM + 10% FBS
F112Classifications:lung_small_cell | Cell Culture Media:F12K + 10% FBS
F113Classifications:lung_small_cell | Cell Culture Media:Leibovitzs L-15 + 10% FBS
F114Classifications:lung_small_cell | Cell Culture Media:RPMI 1640 + 10% FBS
F115Classifications:lung_small_cell | Cell Culture Media:RPMI 1640 + 20% FBS
F116Classifications:lung_small_cell | Cell Culture Media:RPMI 1640 + 5% FBS
F117Classifications:lung_small_cell | Cell Culture Media:Waymouth MB 7521 medium+ 10% FBS
F118Classifications:lymphoma_Burkitt | Cell Culture Media:RPMI 1640 + 10% FBS
F119Classifications:lymphoma_Burkitt | Cell Culture Media:RPMI 1640 + 20% FBS
F120Classifications:lymphoma_DLBCL | Cell Culture Media:AMEM + 20% FBS
F121Classifications:lymphoma_DLBCL | Cell Culture Media:RPMI 1640 + 10% FBS
F122Classifications:lymphoma_DLBCL | Cell Culture Media:RPMI 1640 + 20% FBS
F123Classifications:lymphoma_Hodgkin | Cell Culture Media:DMEM + 10% FBS
F124Classifications:lymphoma_Hodgkin | Cell Culture Media:RPMI 1640 + 10% FBS
F125Classifications:lymphoma_Hodgkin | Cell Culture Media:RPMI 1640 + 20% FBS
F126Classifications:medulloblastoma | Cell Culture Media:DMEM + 10% FBS
F127Classifications:medulloblastoma | Cell Culture Media:EMEM + 10% FBS
F128Classifications:medulloblastoma | Cell Culture Media:EMEM + 20% FBS
F129Classifications:medulloblastoma | Cell Culture Media:RPMI 1640 + 10% FBS
F130Classifications:melanoma | Cell Culture Media:DMEM + 10% FBS
F131Classifications:melanoma | Cell Culture Media:DMEM + 15% FBS
F132Classifications:melanoma | Cell Culture Media:EMEM + 10% FBS
F133Classifications:melanoma | Cell Culture Media:F10 + 10% FBS
F134Classifications:melanoma | Cell Culture Media:IMDM + 20% FBS
F135Classifications:melanoma | Cell Culture Media:McCoys 5A + 10% FBS
F136Classifications:melanoma | Cell Culture Media:McCoys 5A + 15% FBS
F137Classifications:melanoma | Cell Culture Media:RPMI 1640 + 10% FBS
F138Classifications:melanoma | Cell Culture Media:RPMI 1640 + 15% FBS
F139Classifications:mesothelioma | Cell Culture Media:DMEM + 10% FBS
F140Classifications:mesothelioma | Cell Culture Media:RPMI 1640 + 10% FBS
F141Classifications:multiple_myeloma | Cell Culture Media:DMEM;IMDM = 1;1 + 20% FBS
F142Classifications:multiple_myeloma | Cell Culture Media:IMDM + 20% FBS
F143Classifications:multiple_myeloma | Cell Culture Media:RPMI 1640 + 10% FBS
F144Classifications:multiple_myeloma | Cell Culture Media:RPMI 1640 + 15% FBS
F145Classifications:multiple_myeloma | Cell Culture Media:RPMI 1640 + 20% FBS
F146Classifications:neuroblastoma | Cell Culture Media:AMEM + 10% FBS
F147Classifications:neuroblastoma | Cell Culture Media:DMEM + 10% FBS
F148Classifications:neuroblastoma | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F149Classifications:neuroblastoma | Cell Culture Media:EMEM + 10% FBS
F150Classifications:neuroblastoma | Cell Culture Media:EMEM;F12 = 1;1 + 10% FBS
F151Classifications:neuroblastoma | Cell Culture Media:RPMI 1640 + 10% FBS
F152Classifications:neuroblastoma | Cell Culture Media:RPMI 1640 + 20% FBS
F153Classifications:osteosarcoma | Cell Culture Media:DMEM + 10% FBS
F154Classifications:osteosarcoma | Cell Culture Media:EMEM + 10% FBS
F155Classifications:osteosarcoma | Cell Culture Media:McCoys 5A + 10% FBS
F156Classifications:osteosarcoma | Cell Culture Media:McCoys 5A + 15% FBS
F157Classifications:osteosarcoma | Cell Culture Media:MEM + 10% FBS
F158Classifications:osteosarcoma | Cell Culture Media:RPMI 1640 + 10% FBS
F159Classifications:other | Cell Culture Media:McCoys 5A + 10% FBS
F160Classifications:other | Cell Culture Media:RPMI 1640 + 10% FBS
F161Classifications:ovary | Cell Culture Media:DMEM + 10% FBS
F162Classifications:ovary | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F163Classifications:ovary | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F164Classifications:ovary | Cell Culture Media:EMEM + 10% FBS
F165Classifications:ovary | Cell Culture Media:EMEM + 20% FBS
F166Classifications:ovary | Cell Culture Media:F12 + 10% FBS
F167Classifications:ovary | Cell Culture Media:McCoys 5A + 10% FBS
F168Classifications:ovary | Cell Culture Media:MCDB 105;Medium 199 = 1;1 + 10% FBS
F169Classifications:ovary | Cell Culture Media:MCDB 105;Medium 199 = 1;1 + 15% FBS
F170Classifications:ovary | Cell Culture Media:MEM + 10% FBS
F171Classifications:ovary | Cell Culture Media:RPMI 1640 + 10% FBS
F172Classifications:ovary | Cell Culture Media:RPMI 1640 + 20% FBS
F173Classifications:ovary | Cell Culture Media:RPMI 1640 + 5% FBS
F174Classifications:pancreas | Cell Culture Media:DMEM + 10% FBS
F175Classifications:pancreas | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F176Classifications:pancreas | Cell Culture Media:EMEM + 10% FBS
F177Classifications:pancreas | Cell Culture Media:F10 + 10% FBS
F178Classifications:pancreas | Cell Culture Media:IMDM + 10% FBS
F179Classifications:pancreas | Cell Culture Media:IMDM + 20% FBS
F180Classifications:pancreas | Cell Culture Media:McCoys 5A + 10% FBS
F181Classifications:pancreas | Cell Culture Media:MEM + 10% FBS
F182Classifications:pancreas | Cell Culture Media:RPMI 1640 + 10% FBS
F183Classifications:pancreas | Cell Culture Media:RPMI 1640 + 15% FBS
F184Classifications:prostate | Cell Culture Media:DMEM + 10% FBS
F185Classifications:prostate | Cell Culture Media:EMEM + 10% FBS
F186Classifications:prostate | Cell Culture Media:F12 + 10% FBS
F187Classifications:prostate | Cell Culture Media:F12 + 20% FBS
F188Classifications:prostate | Cell Culture Media:RPMI 1640 + 10% FBS
F189Classifications:prostate | Cell Culture Media:RPMI 1640 + 5% FBS
F190Classifications:soft_tissue | Cell Culture Media:DMEM + 10% FBS
F191Classifications:soft_tissue | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F192Classifications:soft_tissue | Cell Culture Media:EMEM + 10% FBS
F193Classifications:soft_tissue | Cell Culture Media:McCoys 5A + 10% FBS
F194Classifications:soft_tissue | Cell Culture Media:RPMI 1640 + 10% FBS
F195Classifications:soft_tissue | Cell Culture Media:RPMI 1640 + 20% FBS
F196Classifications:stomach | Cell Culture Media:DMEM + 10% FBS
F197Classifications:stomach | Cell Culture Media:DMEM + 5% FBS
F198Classifications:stomach | Cell Culture Media:F10 + 10% FBS
F199Classifications:stomach | Cell Culture Media:F12K + 10% FBS
F200Classifications:stomach | Cell Culture Media:IMDM + 20% FBS
F201Classifications:stomach | Cell Culture Media:MEM + 10% FBS
F202Classifications:stomach | Cell Culture Media:MEM + 15% FBS
F203Classifications:stomach | Cell Culture Media:RPMI 1640 + 10% FBS
F204Classifications:stomach | Cell Culture Media:RPMI 1640 + 15% FBS
F205Classifications:T-cell_ALL | Cell Culture Media:RPMI 1640 + 10% FBS
F206Classifications:T-cell_ALL | Cell Culture Media:RPMI 1640 + 15% FBS
F207Classifications:T-cell_ALL | Cell Culture Media:RPMI 1640 + 20% FBS
F208Classifications:T-cell_lymphoma_other | Cell Culture Media:IMDM + 20% FBS
F209Classifications:T-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 10% FBS
F210Classifications:T-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 15% FBS
F211Classifications:T-cell_lymphoma_other | Cell Culture Media:RPMI 1640 + 20% FBS
F212Classifications:thyroid | Cell Culture Media:DMEM + 10% FBS
F213Classifications:thyroid | Cell Culture Media:DMEM + 20% FBS
F214Classifications:thyroid | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F215Classifications:thyroid | Cell Culture Media:DMEM;F12 = 1;1 + 5% FBS
F216Classifications:thyroid | Cell Culture Media:EMEM + 10% FBS
F217Classifications:thyroid | Cell Culture Media:F12K + 10% FBS
F218Classifications:thyroid | Cell Culture Media:RPMI 1640 + 10% FBS
F219Classifications:thyroid | Cell Culture Media:RPMI 1640 + 20% FBS
F220Classifications:upper_aerodigestive | Cell Culture Media:DMEM + 10% FBS
F221Classifications:upper_aerodigestive | Cell Culture Media:DMEM + 20% FBS
F222Classifications:upper_aerodigestive | Cell Culture Media:DMEM;F12 = 1;1 + 10% FBS
F223Classifications:upper_aerodigestive | Cell Culture Media:EMEM + 10% FBS
F224Classifications:upper_aerodigestive | Cell Culture Media:EMEM + 15% FBS
F225Classifications:upper_aerodigestive | Cell Culture Media:IMDM + 10% FBS
F226Classifications:upper_aerodigestive | Cell Culture Media:RPMI 1640 + 10% FBS
F227Classifications:urinary_tract | Cell Culture Media:DMEM + 10% FBS
F228Classifications:urinary_tract | Cell Culture Media:DMEM + 15% FBS
F229Classifications:urinary_tract | Cell Culture Media:DMEM;RPMI = 2;1 + 10% FBS
F230Classifications:urinary_tract | Cell Culture Media:EMEM + 10% FBS
F231Classifications:urinary_tract | Cell Culture Media:F12 + 10% FBS
F232Classifications:urinary_tract | Cell Culture Media:Leibovitzs L-15 + 10% FBS
F233Classifications:urinary_tract | Cell Culture Media:McCoys 5A + 10% FBS
F234Classifications:urinary_tract | Cell Culture Media:MEM + 10% FBS
F235Classifications:urinary_tract | Cell Culture Media:RPMI 1640 + 10% FBS
Data matrix
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