Clustering data with heatmap algorithm for (Study ST002023)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment


The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1Short sample name:L103 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F2Short sample name:L104 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F3Short sample name:L105 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F4Short sample name:L108 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F5Short sample name:L110 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F6Short sample name:L112 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F7Short sample name:L114 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F8Short sample name:L116 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F9Short sample name:L117 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F10Short sample name:L118 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F11Short sample name:L122 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F12Short sample name:L123 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F13Short sample name:L124 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F14Short sample name:L127 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F15Short sample name:L128 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F16Short sample name:L12 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F17Short sample name:L132 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F18Short sample name:L135 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F19Short sample name:L136 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F20Short sample name:L139 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F21Short sample name:L140 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F22Short sample name:L142 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F23Short sample name:L143 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F24Short sample name:L144 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F25Short sample name:L145 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F26Short sample name:L148 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F27Short sample name:L15 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F28Short sample name:L16 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F29Short sample name:L17 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F30Short sample name:L18 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F31Short sample name:L22 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F32Short sample name:L23 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F33Short sample name:L25 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F34Short sample name:L28 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F35Short sample name:L2 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F36Short sample name:L30 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F37Short sample name:L32 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F38Short sample name:L33 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F39Short sample name:L34 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F40Short sample name:L36 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F41Short sample name:L38 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F42Short sample name:L43 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F43Short sample name:L45 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F44Short sample name:L47 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F45Short sample name:L48 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F46Short sample name:L49 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F47Short sample name:L4 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F48Short sample name:L52 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F49Short sample name:L53 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F50Short sample name:L55 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F51Short sample name:L56 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F52Short sample name:L58 | Organ:Liver | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F53Short sample name:L5 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F54Short sample name:L62 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F55Short sample name:L65 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F56Short sample name:L66 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F57Short sample name:L67 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F58Short sample name:L6 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F59Short sample name:L70 | Organ:Liver | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F60Short sample name:L72 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F61Short sample name:L73 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F62Short sample name:L74 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F63Short sample name:L76 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F64Short sample name:L80 | Organ:Liver | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F65Short sample name:L82 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F66Short sample name:L85 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F67Short sample name:L88 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F68Short sample name:L89 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F69Short sample name:L8 | Organ:Liver | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F70Short sample name:L90 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F71Short sample name:L92 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F72Short sample name:L93 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F73Short sample name:L94 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F74Short sample name:L96 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F75Short sample name:L98 | Organ:Liver | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F76Short sample name:S103 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F77Short sample name:S104 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F78Short sample name:S105 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F79Short sample name:S108 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F80Short sample name:S110 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:2 weeks
F81Short sample name:S112 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F82Short sample name:S114 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F83Short sample name:S116 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F84Short sample name:S117 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F85Short sample name:S118 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:2 weeks
F86Short sample name:S122 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F87Short sample name:S123 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F88Short sample name:S124 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F89Short sample name:S127 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F90Short sample name:S128 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:2 weeks
F91Short sample name:S12 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F92Short sample name:S132 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F93Short sample name:S135 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F94Short sample name:S136 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F95Short sample name:S139 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F96Short sample name:S140 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:2 weeks
F97Short sample name:S142 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F98Short sample name:S143 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F99Short sample name:S144 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F100Short sample name:S145 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F101Short sample name:S148 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:2 weeks
F102Short sample name:S15 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F103Short sample name:S16 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F104Short sample name:S17 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F105Short sample name:S18 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:2 weeks | Recovery:0 weeks
F106Short sample name:S22 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F107Short sample name:S23 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F108Short sample name:S25 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F109Short sample name:S28 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F110Short sample name:S2 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F111Short sample name:S30 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:2 weeks | Recovery:0 weeks
F112Short sample name:S32 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F113Short sample name:S33 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F114Short sample name:S34 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F115Short sample name:S36 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F116Short sample name:S38 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:2 weeks | Recovery:0 weeks
F117Short sample name:S43 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F118Short sample name:S45 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F119Short sample name:S47 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F120Short sample name:S48 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F121Short sample name:S49 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:2 weeks | Recovery:0 weeks
F122Short sample name:S4 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F123Short sample name:S52 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F124Short sample name:S53 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F125Short sample name:S55 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F126Short sample name:S56 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F127Short sample name:S58 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:4 weeks | Recovery:0 weeks
F128Short sample name:S5 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F129Short sample name:S62 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F130Short sample name:S65 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F131Short sample name:S66 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F132Short sample name:S6 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F133Short sample name:S70 | Organ:Thyroid | Treatment:Phenytoin | Concentration:300 ppm | Period:4 weeks | Recovery:0 weeks
F134Short sample name:S72 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F135Short sample name:S73 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F136Short sample name:S74 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F137Short sample name:S76 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F138Short sample name:S80 | Organ:Thyroid | Treatment:Phenytoin | Concentration:2400 ppm | Period:4 weeks | Recovery:0 weeks
F139Short sample name:S82 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F140Short sample name:S85 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F141Short sample name:S88 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F142Short sample name:S89 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F143Short sample name:S8 | Organ:Thyroid | Treatment:Control | Concentration:- | Period:2 weeks | Recovery:0 weeks
F144Short sample name:S90 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:5 ppm | Period:4 weeks | Recovery:0 weeks
F145Short sample name:S92 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F146Short sample name:S93 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F147Short sample name:S94 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F148Short sample name:S96 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
F149Short sample name:S98 | Organ:Thyroid | Treatment:6-propyl-2-thiouracil | Concentration:50 ppm | Period:4 weeks | Recovery:0 weeks
Data matrix
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