Data for (Study ST003726)

(Analysis AN006112)

Values for each metabolite have been scaled by dividing by the mean across all factors

Run Hierarchial cluster analysis on this study | Run Heatmap cluster analysis on this study

Metabolite	F1	F2	F3	F4	F5	F6	F7	F8	F9	F10	F11	F12	F13
1,2^-O-dimethyladenosine	0.0351	1.3377	0.1118	0.0789	0.0526	0.1338	1.0175	0.0921	5.0292	0.0351	0.3180	0.0395	1.5906
1-methyladenosine	0.0014	0.4620	0.0074	0.7367	3.6966	0.0456	1.1380	0.0178	3.0081	0.0057	1.2462	0.0069	1.4634
1-methylguanosine	3.1666	0.2517	0.0022	0.5203	11.3806	0.0079	0.3676	0.0014	0.9227	0.0040	0.7748	0.0051	0.7016
1-methylinosine	0.0001	0.0287	0.0140	1.3372	0.7784	0.0679	1.4613	0.0113	3.0174	0.0087	1.7696	0.0097	1.3101
1-methylpseudouridine_1	0.0160	0.0981	0.1328	5.3287	0.1565	0.0145	0.0290	0.0256	0.0779	0.0800	1.9707	0.0109	1.0127
1-methylpseudouridine_2	0.0043	0.0590	0.1062	5.3585	0.1648	0.0088	0.0290	0.0192	0.0732	0.0084	2.0383	0.0038	1.0482
2,8-dimethyladenosine	0.1166	0.0194	0.1166	6.4989	0.1166	0.1166	0.2333	0.0972	0.0972	0.0923	0.1069	0.3790	0.4341
2-methyladenosine	22.4812	0.0006	0.0003	0.0002	0.0011	0.0006	0.0036	0.0007	0.0007	0.0008	0.0005	0.0007	0.0008
2-methylthio-N6-isopentenyladenosine_1	19.1955	2.7389	0.0032	0.0027	0.0064	0.0024	0.0019	0.0018	0.0026	0.0060	0.0052	0.0022	0.0018
2-methylthio-N6-isopentenyladenosine_2	17.5821	2.5275	0.1284	0.0805	0.0058	0.1531	0.1386	0.1630	0.1574	0.0042	0.0035	0.0055	0.1467
2-methylthio-N6-methyladenosine	0.9329	1.0366	0.8293	0.9848	1.6585	0.4146	0.6220	0.7256	1.5341	0.8984	0.7256	1.4512	0.6911
2^-O-methyladenosine	0.0201	10.9231	0.0003	0.0004	7.6835	0.0068	0.2543	0.0048	0.7402	0.0036	0.4056	0.0014	0.2028
2^-O-methylcytidine	0.3541	3.7110	0.0113	0.6884	2.2949	0.0278	0.7110	0.0175	2.8525	0.0150	1.1837	0.0553	1.0312
2^-O-methylguanosine	0.6655	5.0853	0.0081	0.2710	3.4506	0.0313	0.7984	0.0174	1.5520	0.0258	2.1768	0.0209	1.1401
2^-O-methylinosine_1	1.1126	1.1951	0.6181	0.4808	1.4011	0.5563	1.1126	0.3709	0.8929	0.9066	2.2047	2.0192	0.9890
2^-O-methylinosine_2	1.7686	0.6141	0.5281	0.9989	0.6878	0.2088	0.3439	0.3193	2.0060	0.5772	2.0019	1.1053	1.1135
2^-O-methyluridine	0.6285	4.9994	0.0057	0.2640	2.7930	0.0283	1.0666	0.0218	1.9359	0.0380	1.8887	0.0138	0.9261
2-thio-2^-O-methyluridine	0.0640	0.1281	0.1281	0.0562	0.1112	0.2106	3.6697	0.1887	4.3470	0.1870	0.0826	0.0842	0.1056
2-thiocytidine	0.3312	0.0002	0.0083	3.6853	0.1879	0.0002	0.0003	0.0001	0.0178	0.0126	3.3778	0.0280	2.6964
2-thiouridine	0.0968	0.0076	0.0117	0.2461	0.0024	0.0983	2.0689	0.0031	1.4372	0.0024	4.6597	0.0012	2.4381
3,2^-O-dimethyluridine	0.0493	0.0555	0.5271	6.3637	0.1541	0.1911	0.2158	0.0555	0.0637	0.2003	0.1880	0.0616	0.1315
3-(3-amino-3-carboxypropyl)uridine	2.9019	0.6126	1.0094	0.6248	0.0996	0.3171	0.8624	1.6236	1.1505	1.1970	1.8428	0.0432	0.9574
3-methylcytidine	0.0128	0.5915	0.0001	0.0002	20.0129	0.0010	0.0087	0.0119	0.1122	0.0005	0.0017	0.0002	0.0067
3-methylpseudouridine_1	9.6273	0.0193	0.0099	1.1523	0.0188	0.0555	1.5523	0.0151	0.0057	0.0666	2.2212	0.0163	1.0121
3-methylpseudouridine_2	0.9134	0.0024	0.0736	0.8006	0.0013	0.3465	8.8599	0.0009	0.0016	0.0026	0.2268	0.0008	0.1039
3-methyluridine	5.4896	3.1070	0.0009	0.0016	5.9582	0.0176	0.8681	0.0016	0.6174	0.0031	1.4178	0.0025	0.6468
4-demethylwyosine	0.0007	0.0050	0.0706	4.0064	0.0959	0.0483	1.4340	0.0046	0.6611	NA	NA	0.0007	0.8565
4-thiouridine	1.2248	0.0011	0.0085	1.7898	0.0033	0.0617	0.1381	0.0148	1.3821	0.0163	4.0408	0.0119	2.1317
5,2^-O-dimethylcytidine	14.9568	0.0249	0.0050	0.0035	0.0012	0.0162	0.4311	0.0062	2.1113	0.0008	0.0421	0.0026	0.1154
5,2^-O-dimethyluridine	0.0020	0.0775	0.0286	2.6133	0.0001	0.1099	7.1485	0.0004	0.0010	0.0007	0.0006	0.0003	0.0002
5-carbamoylmethyluridine_1	0.0106	0.1881	0.0044	1.3821	17.3775	0.0113	0.0075	0.0111	0.0167	0.3152	0.0086	0.0027	0.0130
5-carbamoylmethyluridine_2	0.0123	0.2477	0.0025	0.1795	21.6007	0.0022	0.0025	0.0031	0.0023	0.0141	0.0092	0.0018	0.0188
5-carboxycytidine	0.0530	0.2917	1.2635	1.3603	0.2718	1.0691	1.1090	1.5120	0.9429	1.1183	1.3466	NA	0.9038
5-carboxymethylaminomethyluridine_1	0.2293	0.1433	0.1433	2.3159	0.1548	0.2264	0.1146	0.0917	0.2809	0.2838	3.0726	0.2924	4.0777
5-carboxymethylaminomethyluridine_2	9.3209	1.4599	0.7299	0.6364	0.4492	0.7861	0.6176	0.3369	0.3743	0.3369	0.2995	0.3369	0.6738
5-carboxymethylaminomethyluridine_3	1.6189	0.3519	0.1173	2.1429	0.5865	1.0441	0.3637	0.4223	0.3128	0.2346	1.9121	0.4927	2.8780
5-carboxymethyluridine_1	1.6577	2.6381	0.2982	1.2702	3.3457	0.2426	0.4902	1.0310	0.7210	0.1516	1.1877	1.5566	1.0377
5-carboxymethyluridine_2	0.0033	0.0007	0.0869	2.0230	0.0028	0.2516	6.8709	0.0007	0.0010	0.0003	0.0002	0.0006	0.0005
5-formylcytidine	3.7696	0.7423	0.9215	1.0832	0.0106	0.1223	0.4799	0.6815	1.2565	0.7991	1.7678	0.0059	1.0632
5-hydroxymethylcytidine	0.9479	2.8122	0.3831	0.0869	0.2133	0.3555	2.3975	0.1422	2.7911	0.1264	0.3844	0.1580	1.3271
5-hydroxyuridine	3.6873	0.4542	0.2393	4.0536	0.2540	0.5030	0.6593	0.0977	0.3012	0.6447	0.3297	0.0733	0.0781
5-methoxycarbonylmethyl-2^-O-methyluridine	0.0295	0.0423	0.0167	0.0303	0.0474	0.0243	0.5162	0.0295	6.9932	0.0134	0.0173	0.0628	0.0282
5-methoxycarbonylmethyl-2-thiouridine_1	0.0053	0.1486	0.0063	0.0044	19.8012	0.0152	0.3812	0.0173	0.3777	0.0083	0.0049	0.0263	0.0213
5-methoxycarbonylmethyl-2-thiouridine_2	0.0060	0.1559	0.0022	0.0039	20.4500	0.0081	0.3390	0.0031	0.3576	0.0050	0.0048	0.0744	0.0055
5-methoxycarbonylmethyluridine_1	0.0248	0.0098	0.0237	0.0266	20.5361	0.0299	0.0459	0.0382	0.3837	0.0382	0.0418	0.0093	0.1946
5-methoxycarbonylmethyluridine_2	0.0121	0.0282	0.0329	0.0235	20.7804	0.0088	0.0268	0.0325	0.3664	0.0440	0.1026	0.0102	0.0245
5-methoxyuridine	0.0979	0.1697	1.8081	0.1871	0.1632	0.6234	0.2252	0.7050	0.5505	1.2957	4.0960	0.0196	2.0235
5-methyl-2-thiouridine	0.0035	0.0035	0.0169	0.0068	0.0110	0.2143	2.9380	0.0191	0.0276	0.0246	5.1795	0.0152	3.7320
5-methylaminomethyl-2-thiouridine_1	5.6170	0.0040	0.0293	3.0689	0.0018	0.0049	0.0166	NA	NA	0.0025	0.0481	0.0025	NA
5-methylaminomethyl-2-thiouridine_2	8.2973	0.0050	0.0310	4.5263	0.0053	0.0029	0.0031	0.0013	0.0023	0.0064	0.0041	0.0041	0.0052
5-methylcytidine	1.0329	0.5523	0.0080	0.1608	4.2596	0.0305	0.7336	0.0131	2.4699	0.0323	2.2143	0.0593	1.7687
5-methyldihydrouridine	0.0702	0.0474	0.0068	3.4706	0.2017	0.0013	0.0170	0.0230	0.0108	0.0243	3.5031	0.0026	2.7396
5-methyluridine	3.6137	0.1269	0.0858	0.3385	10.1398	0.1920	2.8620	0.0069	0.0242	0.0613	0.3921	0.0040	0.2231
7-methylguanosine	8.6022	1.6336	0.0002	0.0002	10.5675	0.0021	0.0329	0.0146	0.2194	0.0053	0.2506	0.0078	0.2888
8-methyladenosine	11.4997	7.5354	0.0027	0.0422	0.3641	0.0068	0.1470	0.0214	0.7160	0.0474	0.1301	0.0073	0.0864
adenosine	3.4215	2.8172	1.0580	0.9909	3.1667	0.3716	0.3768	0.5959	0.6879	0.6808	0.7018	0.2643	0.5467
cytidine	2.8258	2.9181	0.5520	0.9496	2.4974	0.2994	0.5649	0.5592	1.0958	0.5090	1.0056	0.3359	0.9105
dihydrouridine	2.8480	0.1863	0.0073	0.0080	19.1904	0.0085	0.0057	0.0132	0.0047	0.0670	0.0098	0.0197	0.0050
guanosine	3.2213	2.8954	0.7375	0.9019	2.5766	0.2540	0.5133	0.4262	0.9295	0.5963	1.2073	0.0933	0.7841
inosine	0.2203	1.0096	0.0367	0.1003	19.6399	0.0202	0.0355	0.0439	0.0537	0.0675	0.3801	0.0080	0.0242
isowyosine	0.0005	0.0010	0.0183	0.8787	0.0007	0.0466	0.9702	0.0263	4.5199	NA	NA	0.0008	0.1364
N2,2^-O-dimethylguanosine	0.0002	0.0004	0.0565	0.6050	0.0002	0.2569	6.5077	0.0002	0.0219	0.0184	2.2278	0.0069	1.5196
N2,7-dimethylguanosine_1	0.0361	0.0178	0.0047	0.0038	0.1557	0.1579	0.4574	0.0217	0.0227	0.0262	4.9044	4.2558	4.2229
N2,7-dimethylguanosine_2	0.0095	0.0021	0.0064	0.7298	0.0120	0.0060	0.0028	0.0021	0.0054	0.0327	5.7967	NA	4.8728
N2-methylguanosine	3.9417	0.2781	0.0025	0.4822	4.6984	0.0470	0.9948	0.0075	2.3762	0.0065	0.9684	0.0034	0.6380
N2,N2,7-trimethylguanosine_1	0.1000	2.2217	0.6443	0.5795	1.3052	0.4221	0.4471	0.1055	0.4110	1.1830	0.0750	10.0697	0.1222
N2,N2,7-trimethylguanosine_2	0.0011	0.0462	0.0162	2.5817	0.0187	0.2162	7.3927	0.0002	0.0054	0.0004	0.0008	NA	0.0012
N2,N2-dimethylguanosine	0.0018	0.0785	0.0037	0.7399	6.8559	0.0246	0.7447	0.0088	2.8366	0.0113	1.1472	0.0038	0.6391
N4,2^-O-dimethylcytidine	14.9975	0.0276	0.0008	0.0012	0.0006	0.0116	0.4302	0.0071	2.1052	0.0016	0.0397	0.0009	0.1196
N4-acetyl-2^-O-methylcytidine_1	0.0039	0.0025	0.0011	0.0013	0.0053	0.0301	0.6937	0.0056	2.0439	0.0087	3.7798	0.0363	4.5231
N4-acetyl-2^-O-methylcytidine_2	0.0004	0.0017	0.0004	0.0006	0.0013	0.0186	0.4606	0.0084	2.5123	0.0094	2.6279	0.0028	5.8086
N4-acetylcytidine_1	0.0038	0.5711	0.0112	0.0079	1.5539	0.0231	0.5641	0.0123	1.3731	0.0984	4.7124	0.0941	3.5356
N4-acetylcytidine_2	0.0036	0.5529	0.0003	0.0004	1.5071	0.0215	0.5563	0.0127	1.3733	0.1009	4.5467	0.0970	3.5030
N4-methylcytidine_1	1.0142	0.5384	0.0078	0.1570	4.1646	0.0296	0.9606	0.0125	2.4148	0.0318	2.1587	0.0582	1.7333
N4-methylcytidine_2	0.0129	0.0531	0.1796	0.8271	0.0015	0.4979	7.2872	0.0015	0.0041	NA	NA	0.0034	0.0030
N4,N4,2^-O-trimethylcytidine	0.1491	0.3261	1.5233	0.9938	0.2795	0.2702	0.4938	0.2702	3.9068	0.1444	0.1491	0.1025	1.0062
N4,N4-dimethylcytidine	0.0022	0.0018	0.0023	0.0015	0.0030	0.0017	0.0033	0.0007	0.0011	0.0074	7.0102	0.1083	5.5509
N6,2^-O-dimethyladenosine	0.0451	21.2805	0.0042	0.0258	0.0304	0.0038	0.0059	0.0031	0.0336	0.0173	0.0546	0.7508	0.0269
N6-acetyladenosine_1	0.0271	0.0423	0.1465	0.0615	0.0694	3.3258	1.2573	0.2608	3.6487	0.1135	0.2980	0.0711	0.4109
N6-acetyladenosine_2	0.1751	0.5428	0.8580	0.3911	1.4708	0.4465	0.5078	0.5603	2.3872	0.5165	1.7685	0.5953	1.7510
N6-(cis-hydroxyisopentenyl)adenosine	0.8553	1.5789	0.6250	0.4825	2.0395	0.4276	0.4605	0.3947	2.3465	1.3816	1.0855	0.5921	0.3947
N6-formyladenosine_1	0.0859	0.0416	0.1150	6.7707	0.0443	0.0707	0.0859	0.1136	0.1541	0.0818	0.0651	0.0305	0.0998
N6-formyladenosine_2	0.1107	0.4577	0.1002	6.1340	0.1555	0.0553	0.0658	0.0748	0.1157	0.0165	0.4472	1.0768	0.3370
N6-hydroxymethyladenosine_1	2.3349	1.4408	0.5821	0.6154	2.3478	0.1737	0.4631	0.3473	1.9361	0.7751	1.2125	0.1479	1.2093
N6-hydroxymethyladenosine_2	2.9200	1.7356	0.4945	0.5767	2.6230	0.1318	0.2136	0.2074	2.1542	0.7467	1.0684	0.0195	0.9947
N6-isopentenyladenosine_1	0.1952	0.1551	0.0017	0.0073	21.4350	0.0016	0.0015	0.0014	0.0048	0.0034	0.0019	0.1525	0.0044
N6-isopentenyladenosine_2	0.1957	0.1529	0.0016	0.0071	21.4531	0.0016	0.0016	0.0013	0.0047	0.0032	0.0019	0.1376	0.0045
N6-methyladenosine	11.4489	7.5778	0.0029	0.0426	0.3664	0.0066	0.1470	0.0214	0.7170	0.0475	0.1303	0.0078	0.0868
N6-methyl-N6-threonylcarbamoyladenosine_1	0.0075	0.0004	0.0800	7.7024	0.0032	0.1156	1.1662	0.0001	0.0004	0.0010	0.0020	0.0001	0.0012
N6-methyl-N6-threonylcarbamoyladenosine_2	16.8240	2.4552	0.0671	0.0313	0.0671	0.1342	0.0470	0.1342	0.0984	0.0604	0.0537	0.0402	0.0671
N6,N6,2^-O-trimethyladenosine	0.6769	0.5077	1.1846	0.9026	2.3692	0.9308	1.1000	1.3538	0.7897	1.4385	0.3385	0.3385	1.2410
N6,N6-dimethyladenosine	5.4602	3.2904	0.0060	1.2690	4.0870	0.0060	0.1148	0.0210	0.6050	0.0050	1.0632	0.0781	1.0341
N6-threonylcarbamoyladenosine_1	0.5130	0.1219	0.0132	0.4583	6.4186	0.0361	1.5759	0.0110	3.3997	0.0044	0.0516	0.0480	0.3007
N6-threonylcarbamoyladenosine_2	0.5383	0.1263	0.0138	0.4678	6.5575	0.0364	1.5790	0.0114	3.3330	0.0050	0.0466	0.0637	0.2926
O6-methylguanine	2.9082	1.3393	0.6409	0.5485	1.5497	0.6314	0.3922	0.5166	1.3074	0.9853	0.7175	2.0855	1.1990
pseudouridine	1.6903	5.7897	0.0008	0.5123	6.5219	0.0022	0.2250	0.0050	0.9825	0.0018	1.0471	0.0044	0.9668
uridine	2.9033	2.0987	1.3648	0.9572	3.0017	0.4702	0.4801	0.9290	0.8251	0.5278	0.8255	0.0614	0.5481
uridine 5-oxyacetic acid methyl ester_1	18.7882	0.0354	0.0812	0.0936	0.0223	0.0812	0.0592	0.0223	0.5103	0.0435	0.4500	0.0208	0.2462
uridine 5-oxyacetic acid methyl ester_2	21.9782	0.0267	0.0364	0.0178	0.0133	0.0210	0.0431	0.0113	0.0185	0.0082	0.0226	0.0584	0.0273
uridine 5-oxyacetic acid methyl ester_3	21.7725	0.0136	0.0204	0.0057	0.0089	0.0389	0.0046	0.0241	0.0131	0.0164	0.2227	0.0060	0.0082

Run Hierarchial cluster analysis on this study | Run Heatmap cluster analysis on this study

Factors:

F1	Species:Escherichia coli | Sample source:Total RNA
F2	Species:Homo sapiens | Sample source:Total RNA
F3	Species:Methanococcus maripaludis | Sample source:rRNA_depletion
F4	Species:Methanococcus maripaludis | Sample source:Total RNA
F5	Species:Saccharomyces cerevisiae | Sample source:Total RNA
F6	Species:Sulfolobus acidocaldarius | Sample source:rRNA_depletion
F7	Species:Sulfolobus acidocaldarius | Sample source:Total RNA
F8	Species:Sulfolobus islandicus | Sample source:rRNA_depletion
F9	Species:Sulfolobus islandicus | Sample source:Total RNA
F10	Species:Thermococcus kodakarensis | Sample source:rRNA_depletion
F11	Species:Thermococcus kodakarensis | Sample source:Total RNA
F12	Species:Thermococcus sp. AM4 | Sample source:rRNA_depletion
F13	Species:Thermococcus sp. AM4 | Sample source:Total RNA