Perform Volcano plot analysis on selected experimental conditions followed by MS search on significant features

Group1Experimental factorGroup2
collectionWeek:0 | PUCAI_C3_WKall:mild (10)
collectionWeek:0 | PUCAI_C3_WKall:moderate/severe (24)
collectionWeek:12 | PUCAI_C3_WKall:inactive (18)
collectionWeek:12 | PUCAI_C3_WKall:mild (4)
collectionWeek:12 | PUCAI_C3_WKall:moderate/severe (2)
collectionWeek:4 | PUCAI_C3_WKall:inactive (14)
collectionWeek:4 | PUCAI_C3_WKall:mild (11)
collectionWeek:4 | PUCAI_C3_WKall:moderate/severe (2)
collectionWeek:52 | PUCAI_C3_WKall:inactive (2)
collectionWeek:52 | PUCAI_C3_WKall:moderate/severe (2)

Filtering Parameters
Select threshold % for selection below:
Option 1: No filtering
Option 2: Filter by Sum (Analytes whose sum for all samples falls below the threshold % will be excluded)
Option 3: Filter by Mean (Analytes whose mean for all samples falls below the threshold % will be excluded)
Option 4: Filter by Median (Analytes whose median for all samples falls below the threshold % will be excluded)
Option 5: Filter by Sample threshold       must exceed the above threshold per analyte
In order for an analyte to be retained, the % of samples in one/both groups which are non-zero must exceed the threshold.
Option 6: Remove all analytes containing null values
Sample Normalization Parameters
Normalize samples by:
Volcano Plot Parameters
P-value cutoff: Fold-change cutoff:
MS Search Parameters
Search Refmet database
MS Ion polarity:POSITIVE MS search m/z tolerance:
Ion adducts(choose at least one)
Positive mode:
 [M+H]+ [M+H-H2O]+ [M+Na]+ [M+NH4]+ [M+K]+ [M+2H]2+ [M+2Na]2+ [M+2Na-H]+
[M+H-EtnP]+ [M+H-SerP]+
  logo