RefMet Compound Details

MW structure37863 (View MW Metabolite Database details)
RefMet nameCDP
Systematic name[({[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILESNc1ccn([C@@H]2O[C@H](COP(=O)(O)OP(=O)(O)O)[C@@H](O)[C@H]2O)c(=O)n1   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass403.018188 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC9H15N3O11P2View other entries in RefMet with this formula
InChIInChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H2,10
,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyZWIADYZPOWUWEW-XVFCMESISA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassNucleic acids
Main ClassPyrimidines
Sub ClassPyrimidine rNDP
Pubchem CID6132
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving CDP

Rxn IDKEGG ReactionEnzyme
R00512 ATP + CMP <=> ADP + CDPATP:CMP phosphotransferase
R00570 ATP + CDP <=> ADP + CTPATP:CDP phosphotransferase
R00514 CDP + H2O <=> CMP + OrthophosphateCDP phosphohydrolase
R00569 CTP + H2O <=> CDP + OrthophosphateCTP phosphohydrolase
R02024 dCDP + Thioredoxin disulfide + H2O <=> Thioredoxin + CDP2'-Deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase

Table of KEGG human pathways containing CDP

Pathway IDHuman Pathway# of reactions
hsa00240 Pyrimidine metabolism 5
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