RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet ID	RM0138609
RefMet name	CpU
Synonyms	PubChem Synonyms
Exact mass	545.152298 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C20H28N5O11P	View other entries in RefMet with this formula
Molecular descriptors
Molfile	87063 (Download molfile/View MW Metabolite Database details)
InChI	InChI=1S/C20H28N5O11P/c21-13-1-3-24(19(31)22-13)12-5-9(7-26)18(17(12)30)36-37(33,34)35-8-10-6-11(16(29)15(10)28)25-4-2-14(27)23-20 (25)32/h1-4,9-12,15-18,26,28-30H,5-8H2,(H,33,34)(H2,21,22,31)(H,23,27,32)/t9-,10-,11-,12-,15-,16+,17+,18-/m1/s1
InChIKey	VSIFECIDUDPNRC-NCOIDOBVSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
SMILES	c1cn([C@H]2[C@@H]([C@@H]([C@@H](CO)O2)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@H](n3ccc(=O)[nH]c3=O)O2)O)O)O)c(=O)nc1N Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super Class	Nucleic acids
Main Class	Dinucleotides
Sub Class	Diribonucleotides
Distribution of CpU in NMDR studies
Species	Plot Species distribution
Sample source	Plot Sample source(tissue) distribution
Platform	Platform (MS/NMR) used for detection
Chromatography	Chromatography methods used for detection
Studies	NMDR Studies reporting CpU
External Links
Pubchem CID	145459097
ChEBI ID	165824
Structural annotation level
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)