RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet ID	RM0138922
RefMet name	Cytidine
Systematic name	4-amino-1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one
Synonyms	PubChem Synonyms
Exact mass	243.085522 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C9H13N3O5	View other entries in RefMet with this formula
Molecular descriptors
Molfile	37069 (Download molfile/View MW Metabolite Database details)
InChI	InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1
InChIKey	UHDGCWIWMRVCDJ-XVFCMESISA-N	View other enantiomers/diastereomers of this metabolite in RefMet
SMILES	c1cn([C@H]2[C@@H]([C@@H]([C@@H](CO)O2)O)O)c(=O)nc1N Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super Class	Nucleic acids
Main Class	Pyrimidines
Sub Class	Pyrimidine ribonucleosides
Distribution of Cytidine in NMDR studies
Species	Plot Species distribution
Sample source	Plot Sample source(tissue) distribution
Platform	Platform (MS/NMR) used for detection
Chromatography	Chromatography methods used for detection
Studies	NMDR Studies reporting Cytidine
External Links
Pubchem CID	6175
ChEBI ID	17562
KEGG ID	C00475
HMDB ID	HMDB0000089
Chemspider ID	5940
MetaCyc ID	CYTIDINE
EPA CompTox	DTXCID80196738
Spectral data for Cytidine standards
BMRB ID(NMR)	View NMR spectra
NP-MRD ID(NMR)	View NMR spectra
MassBank(EU)	View MS spectra
Structural annotation level
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving Cytidine

Rxn ID	KEGG Reaction	Enzyme
R00511	CMP + H2O <=> Cytidine + Orthophosphate	cytidine-5'-monophosphate phosphohydrolase
R00513	ATP + Cytidine <=> ADP + CMP	ATP:cytidine 5'-phosphotransferase
R00516	UTP + Cytidine <=> UDP + CMP	UTP:cytidine 5'-phosphotransferase
R00517	GTP + Cytidine <=> GDP + CMP	GTP:cytidine 5'-phosphotransferase
R00962	ITP + Cytidine <=> IDP + CMP	ITP:cytidine 5'-phosphotransferase
R01548	dATP + Cytidine <=> dADP + CMP	dATP:cytidine 5'-phosphotransferase
R01878	Cytidine + H2O <=> Uridine + Ammonia	Cytidine aminohydrolase
R02091	dGTP + Cytidine <=> dGDP + CMP	dGTP:cytidine 5'-phosphotransferase
R02096	dTTP + Cytidine <=> dTDP + CMP	dTTP:cytidine 5'-phosphotransferase
R02371	dCTP + Cytidine <=> dCDP + CMP	dCTP:cytidine 5'-phosphotransferase
R02372	dUTP + Cytidine <=> dUDP + CMP	dUTP:cytidine 5'-phosphotransferase

Table of KEGG human pathways containing Cytidine

Pathway ID	Human Pathway	# of reactions
hsa00240	Pyrimidine metabolism	4
hsa01100	Metabolic pathways	2
hsa01232	Nucleotide metabolism	2