RefMet Compound Details

MW structure37025 (View MW Metabolite Database details)
RefMet nameDeoxycytidine
Systematic name4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one
SMILESc1cn([C@H]2C[C@@H]([C@@H](CO)O2)O)c(=O)nc1N   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass227.090607 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC9H13N3O4View other entries in RefMet with this formula
InChIInChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1
InChIKeyCKTSBUTUHBMZGZ-SHYZEUOFSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassNucleic acids
Main ClassPyrimidines
Sub ClassPyrimidine deoxyribonucleosides
Pubchem CID13711
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving Deoxycytidine

Rxn IDKEGG ReactionEnzyme
R01664 dCMP + H2O <=> Deoxycytidine + Orthophosphate2'-deoxycytidine 5'-monophosphate phosphohydrolase
R01666 ATP + Deoxycytidine <=> ADP + dCMPATP:deoxycitidine 5'-phosphotransferase
R02485 Deoxycytidine + H2O <=> Deoxyuridine + Ammoniadeoxycytidine aminohydrolase

Table of KEGG human pathways containing Deoxycytidine

Pathway IDHuman Pathway# of reactions
hsa00240 Pyrimidine metabolism 3
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