RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0006166
RefMet nameGlcCer 16:0;O3/23:0
Alternative nameGlcCer(t16:0/23:0)
Systematic nameN-(tricosanoyl)-1-beta-glucosyl-4R-hydroxyhexadecasphinganine
SynonymsPubChem Synonyms
Sum CompositionGlcCer 39:0;O3 View other entries in RefMet with this sum composition
Exact mass787.653734 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC45H89NO9View other entries in RefMet with this formula
Molecular descriptors
Molfile89896 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C45H89NO9/c1-3-5-7-9-11-13-15-16-17-18-19-20-21-22-23-24-26-28-30-32-34-40(49)46-37(36-54-45-44(53)43(52)42(51)39(35-47)5
5-45)41(50)38(48)33-31-29-27-25-14-12-10-8-6-4-2/h37-39,41-45,47-48,50-53H,3-36H2,1-2H3,(H,46,49)/t37-,38+,39+,41-,42+,43-,44+,45+
/m0/s1
InChIKeyNKBCLNFLMREJBP-QFMUXUCCSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@H]1C(C([C@@H]([C@@H](CO)O1)O)O)O)[C@@H]([C@@H](CCCCCCCCCCCC)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassSphingolipids
Main ClassGlycosphingolipids
Sub ClassHexCer (Hexosyl ceramides)
Distribution of GlcCer 16:0;O3/23:0 in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting GlcCer 16:0;O3/23:0
External Links
Pubchem CID145716841
LIPID MAPSLMSP05019A5X
KEGG IDC01190
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving GlcCer 16:0;O3/23:0

Rxn IDKEGG ReactionEnzyme
R01497 UDP-glucose + N-Acylsphingosine <=> UDP + GlucosylceramideUDP-glucose:N-acylsphingosine D-glucosyltransferase
R01498 Glucosylceramide + H2O <=> D-Glucose + N-AcylsphingosineD-Glucosyl-N-acylsphingosine glucohydrolase
R03354 Glucosylceramide + UDP-alpha-D-galactose <=> Lactosylceramide + UDPUDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase
R03355 Lactosylceramide + H2O <=> Glucosylceramide + D-Galactosebeta-D-Galactosyl-1,4-beta-D-glucosylceramide galactohydrolase

Table of KEGG human pathways containing GlcCer 16:0;O3/23:0

Pathway IDHuman Pathway# of reactions
hsa00600 Sphingolipid metabolism 4
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