RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0048182
RefMet nameGlcCer 21:0;O3/12:0
Alternative nameGlcCer(t21:0/12:0)
Systematic nameN-(dodecanoyl)-1-beta-glucosyl-4R-hydroxyheneicosasphinganine
SynonymsPubChem Synonyms
Sum CompositionGlcCer 33:0;O3 View other entries in RefMet with this sum composition
Exact mass703.559834 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC39H77NO9View other entries in RefMet with this formula
Molecular descriptors
Molfile90035 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C39H77NO9/c1-3-5-7-9-11-13-14-15-16-17-18-20-21-23-25-27-32(42)35(44)31(30-48-39-38(47)37(46)36(45)33(29-41)49-39)40-34(4
3)28-26-24-22-19-12-10-8-6-4-2/h31-33,35-39,41-42,44-47H,3-30H2,1-2H3,(H,40,43)/t31-,32+,33+,35-,36+,37-,38+,39+/m0/s1
InChIKeySDIINMBBSLDEAI-XQYXTQRKSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESCCCCCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@H]1C(C([C@@H]([C@@H](CO)O1)O)O)O)NC(=O)CCCCCCCCCCC)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassSphingolipids
Main ClassGlycosphingolipids
Sub ClassHexCer (Hexosyl ceramides)
Distribution of GlcCer 21:0;O3/12:0 in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting GlcCer 21:0;O3/12:0
External Links
Pubchem CID145716980
LIPID MAPSLMSP05019CUK
KEGG IDC01190
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving GlcCer 21:0;O3/12:0

Rxn IDKEGG ReactionEnzyme
R01497 UDP-glucose + N-Acylsphingosine <=> UDP + GlucosylceramideUDP-glucose:N-acylsphingosine D-glucosyltransferase
R01498 Glucosylceramide + H2O <=> D-Glucose + N-AcylsphingosineD-Glucosyl-N-acylsphingosine glucohydrolase
R03354 Glucosylceramide + UDP-alpha-D-galactose <=> Lactosylceramide + UDPUDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase
R03355 Lactosylceramide + H2O <=> Glucosylceramide + D-Galactosebeta-D-Galactosyl-1,4-beta-D-glucosylceramide galactohydrolase

Table of KEGG human pathways containing GlcCer 21:0;O3/12:0

Pathway IDHuman Pathway# of reactions
hsa00600 Sphingolipid metabolism 4
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